spdynmod
R library and data: Spatio-dynamic wetland plant communities model
Science Score: 23.0%
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Repository
R library and data: Spatio-dynamic wetland plant communities model
Basic Info
Statistics
- Stars: 1
- Watchers: 3
- Forks: 1
- Open Issues: 5
- Releases: 0
Metadata Files
README.md
spdynmod
This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License.
Development version of the R library Spdynmod: Spatio-dynamic wetland plant communities model
The stable version can be found on CRAN
An online version with a Graphical User Interface can be found at the following link.
How to install the spdynmod R library
install.packages('spdynmod')
devtools::install_github('javimarlop/spdynmodocpu') # Graphical User Interface version
How to install the development version of the library
library(devtools)
install_github('javimarlop/spdynmod')
Animation of model results
Animation of model results based on default parameters.
How to run the model
Please type help(run_model) for model execution options and library(help=spdynmod) to see all available functions in the library.
run_model()
How to cite this model library
Martínez-López, J.; Martínez-Fernández, J.; Naimi, B.; Carreño, M. F. & Esteve, M. A. (2015), 'An open-source spatio-dynamic wetland model of plant community responses to hydrological pressures ', Ecological Modelling 306, 326 -- 333, http://dx.doi.org/10.1016/j.ecolmodel.2014.11.024
Wetland and watershed maps
You can see the location map of the study wetland and its watershed area by clicking on the wetland.geojson and watershed.geojson files on the /inst/extdata folder.
Model validation
A mutiple resolution goodness of fit assessment function mrgf was included in the library and has been performed for each validation year after Costanza 1989 and Kuhnert et al. 2005. We implemented the version modified by Kuhnert et al. in order to exclude NA values from the analysis. The maps needed to perform this assessment can be found on the inst/extdata folder. See resulting graphs:
References
Costanza, R. (1989), 'Model goodness of fit: A multiple resolution procedure', Ecological Modelling 47(3-4), 199 - 215.
Kuhnert, M.; Voinov, A. & Seppelt, R. (2005), 'Comparing Raster Map Comparison Algorithms for Spatial Modeling and Analysis', Photogrammetric Engineering & Remote Sensing 71(8), 975-984.
Martínez-López J., Martínez-Fernández J. , Naimi B., Carreño M. F., Esteve M. A. (2013), Spatio-temporal dynamic modeling of plant communities responses to hydrological pressures in a semiarid Mediterranean wetland. Ecological Modelling for Ecosystem Sustainability in the context of Global Change - ISEM 19th. Toulouse, France.
Owner
- Name: Martinez-Lopez Javier
- Login: javimarlop
- Kind: user
- Location: Spain
- Company: University of Granada
- Twitter: javimarlop
- Repositories: 35
- Profile: https://github.com/javimarlop
Ecological Modelling and Remote Sensing
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| Name | Commits | |
|---|---|---|
| Javier MARTINEZ LOPEZ | j****z@u****s | 58 |
| Javier | j****z@g****m | 14 |
| javier | j****r@d****n | 1 |
| The Gitter Badger | b****r@g****m | 1 |
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- javimarlop (5)
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Packages
- Total packages: 1
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Total downloads:
- cran 263 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 8
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cran.r-project.org: spdynmod
Spatio-Dynamic Wetland Plant Communities Model
- Homepage: https://github.com/javimarlop/spdynmod
- Documentation: http://cran.r-project.org/web/packages/spdynmod/spdynmod.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 1.1.6
published over 4 years ago
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Maintainers (1)
Dependencies
- raster * depends
- sp * depends
- animation * imports
- deSolve * imports
- igraph * suggests
- knitr * suggests
- roxygen2 * suggests
- testthat * suggests