mimsy
Calculate MIMS dissolved gas concentrations without getting a headache
Science Score: 36.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 8 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.3%) to scientific vocabulary
Repository
Calculate MIMS dissolved gas concentrations without getting a headache
Basic Info
- Host: GitHub
- Owner: michelleckelly
- License: mit
- Language: R
- Default Branch: master
- Homepage: https://michelleckelly.github.io/mimsy/
- Size: 1.1 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 2
- Open Issues: 2
- Releases: 1
Metadata Files
README.md
mimsy 
"Calculate MIMS dissolved gas concentrations without getting a headache."
mimsy is a data analysis package that transforms raw MIMS (Membrane Inlet Mass Spectrometer) signal data into dissolved gas concentration readings (mg, micromole) of N2, O2, and Ar based on gas solubility at temperature, pressure, and salinity. Supports both single and dual-temperature standard calibration MIMS setups with either one or two water baths, and uses a drift correction method to calculate gas concentration values. mimsy is designed to be simple and accessible for non-R users.
This package incorporates portions of the MIMS R functions written by Hilary Madinger and Bob Hall, available on Hilary Madinger's website.
Click on the Get started tab above to read through the how-to guide.
Crunch data in 5 lines of code or less
```R
Load data into R
data <- read.csv(file = "data.csv", header = TRUE, stringsAsFactors = FALSE)
Run the mimsy function
results <- mimsy(data, baromet.press = 977.2, units = "hPa")
Save the results
mimsy.save(results, file = "results.xlsx") # To Excel file save(results, file = "results.RData") # To RData file
Done! :)
```
Installation instructions
```R
Download package
install.packages("mimsy")
Load package into your R environment
library(mimsy) ```
Recommended citation
To see the recommended citation for this package, run citation("mimsy") in the R console:
R
citation("mimsy")
Disclaimer
mimsy holds no endorsement from the Bay Instruments company. This software is preliminary and subject to revision. By the use of this software, the user assumes their own responsibility for ensuring the accuracy of the program.
References
Garcia, H., and L. Gordon (1992), Oxygen solubility in seawater: Better fitting equations. Limnology and Oceanography, 37(6). https://doi.org/10.4319/lo.1992.37.6.1307
Benson, B. B. & Krause, D. (1984). The concentration and isotopic fractionation of oxygen dissolved in freshwater and seawater in equilibrium with the atmosphere. Limnology and Oceanography, 29(3), 620-632. https://doi.org/10.4319/lo.1984.29.3.0620
Stull, D. R. (1947). Vapor Pressure of Pure Substances. Organic and Inorganic Compounds. Industrial & Engineering Chemistry, 39(4), 517-540. https://doi.org/10.1021/ie50448a022
Hamme, R. C. & Emerson, S. R. (2004). The solubility of neon, nitrogen and argon in distilled water and seawater. Deep-Sea Research I, 51(11), 1517-1528. https://doi.org/10.1016/j.dsr.2004.06.009
Owner
- Name: Michelle Catherine Kelly
- Login: michelleckelly
- Kind: user
- Location: Houghton, MI, USA
- Website: https://michelleckelly.github.io/
- Twitter: michelleckelly_
- Repositories: 2
- Profile: https://github.com/michelleckelly
PhD candidate in aquatic ecology & data science
GitHub Events
Total
- Watch event: 2
- Push event: 3
Last Year
- Watch event: 2
- Push event: 3
Committers
Last synced: over 3 years ago
All Time
- Total Commits: 131
- Total Committers: 3
- Avg Commits per committer: 43.667
- Development Distribution Score (DDS): 0.435
Top Committers
| Name | Commits | |
|---|---|---|
| michelleckelly | m****y@k****u | 74 |
| michelleckelly | m****y@g****m | 39 |
| Michelle Catherine Kelly | 3****y@u****m | 18 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 7
- Total pull requests: 1
- Average time to close issues: 5 months
- Average time to close pull requests: less than a minute
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mehagy (3)
- michelleckelly (3)
- jmurd (1)
Pull Request Authors
- michelleckelly (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 264 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 7
- Total maintainers: 1
cran.r-project.org: mimsy
Calculate MIMS Dissolved Gas Concentrations Without Getting a Headache
- Homepage: https://github.com/michelleckelly/mimsy
- Documentation: http://cran.r-project.org/web/packages/mimsy/mimsy.pdf
- License: MIT + file LICENSE
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Latest release: 0.6.5
published almost 2 years ago
Rankings
Maintainers (1)
Dependencies
- dplyr * imports
- lubridate * imports
- magrittr * imports
- openxlsx * imports
- utils * imports
- kableExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- xfun * suggests