RstoxData
R library for reading various biotic and acoustic data formats
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.9%) to scientific vocabulary
Repository
R library for reading various biotic and acoustic data formats
Basic Info
- Host: GitHub
- Owner: StoXProject
- License: lgpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://stoxproject.github.io/RstoxData/
- Size: 7.63 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 8
- Releases: 210
Metadata Files
README.md
RstoxData
Introduction
RstoxData is a package to parse and manipulate various data formats for fisheries.
The package contains functions for reading, filtering and writing fisheries' trawl survey samples (biotic), acoustic trawl survey and commercial catch samples (landings) data in XML formats.
Loaded data can also be filtered by using any supported R conditional syntax such as longitude > 10, or by user pre-defined functions such as inside().
Supported formats:
A. Norwegian Institute of Marine Research (IMR) (data definitions):
- Biotic (fish trawl survey) XML format (up to version 3.1).
- Acoustic (acoustic/echosounder trawl surveys) XML format (version 1).
- Landings (commercial catch samples) XML format (version 2).
B. Norwegian Directorate of Fisheries:
- Sales Notes data in the LSS format.
- Electronic logbooks (ERS) in tabular format.
C. International Council for the Exploration of the Sea (ICES) (data definitions):
- Biotic (fish trawl survey) XML format.
- Acoustic (acoustic/echosounder trawl surveys) XML format.
Installation
Install the latest release from our local repository:
r install.packages("RstoxData", repos = c("https://stoxproject.github.io/repo/", getOption("repos")))Install the latest version from GitHub:
r devtools::install_github("https://github.com/StoXProject/RstoxData")
On computers that return errors when trying to run the Rtools through RStudio (most institutional Windows machines), install the binary directly from https://github.com/StoXProject/RstoxData/releases.
Download the newest RstoxData zip file, click the Packages tab -> Install -> Install from: Package Archive File -> Install. If the installer does not complain, the package is installed correctly.
License
LGPL-3 © Norwegian Institute of Marine research (IMR) (homepage).
The development of RstoxData package is mainly supported by IMR's REDUS and SEA2DATA projects.
RstoxData is part of the bigger StoX ecosystem.
For historical release notes, see: https://github.com/StoXProject/RstoxData/blob/master/NEWS.md
Owner
- Name: StoXProject
- Login: StoXProject
- Kind: organization
- Website: https://stoxproject.github.io/
- Repositories: 7
- Profile: https://github.com/StoXProject
GitHub Events
Total
- Create event: 15
- Release event: 16
- Issues event: 3
- Watch event: 1
- Delete event: 4
- Issue comment event: 3
- Push event: 97
- Pull request event: 106
Last Year
- Create event: 15
- Release event: 16
- Issues event: 3
- Watch event: 1
- Delete event: 4
- Issue comment event: 3
- Push event: 97
- Pull request event: 106
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| edvinf | e****k@g****m | 395 |
| Arne Johannes Holmin | a****h@h****o | 325 |
| Ibrahim Umar | i****r@u****o | 94 |
| Ibrahim Umar | i****r@i****o | 92 |
| Ibrahim Umar | i****r@h****o | 87 |
| Holmin | a****h@H****o | 18 |
| Vatnehol | s****v@h****o | 8 |
| Ibrahim Umar | i****m | 6 |
| sindre vatnehol | s****l@i****o | 6 |
| Arne Johannes Holmin | A****n@h****o | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 37
- Average time to close issues: N/A
- Average time to close pull requests: about 2 hours
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 27
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 37
- Average time to close issues: N/A
- Average time to close pull requests: about 2 hours
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 27
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- edvinf (4)
- arnejohannesholmin (2)
Pull Request Authors
- arnejohannesholmin (85)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 5
- Total versions: 8
- Total maintainers: 1
cran.r-project.org: RstoxData
Tools to Read and Manipulate Fisheries Data
- Homepage: https://github.com/StoXProject/RstoxData
- Documentation: http://cran.r-project.org/web/packages/RstoxData/RstoxData.pdf
- License: LGPL-3
- Status: removed
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Latest release: 1.2.1
published about 5 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.6 depends
- Rcpp >= 1.0.0 imports
- data.table >= 1.12.6 imports
- stringi >= 1.4.3 imports
- units >= 0.7 imports
- xml2 >= 1.2.2 imports
- xslt >= 1.4 imports
- tinytest >= 1.2.0 suggests
- actions/cache v3 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- ncipollo/release-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-r v1 composite