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swfscAirDAS

Functions for processing and analyzing aerial survey DAS data generated by the TURTLE, PHOCOENA, and CARETTA programs at the Southwest Fisheries Science Center

https://github.com/swfsc/swfscairdas

Science Score: 26.0%

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    CITATION.cff file
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    Scientific vocabulary similarity
    Low similarity (13.8%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Functions for processing and analyzing aerial survey DAS data generated by the TURTLE, PHOCOENA, and CARETTA programs at the Southwest Fisheries Science Center

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 1
  • Releases: 4
Created over 6 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

swfscAirDAS

CRAN version R-CMD-check <!-- badges: end -->

This package contains functions designed for processing and analyzing aerial survey DAS data (AirDAS) generated by the Southwest Fisheries Science Center using one of the following programs: PHOCOENA, CARETTA, or TURTLE (such as TURTLEP or TURTLE4D). Functionality includes reading AirDAS data into a data frame, processing this data (extracting state and condition information for each AirDAS event), and summarizing sighting and effort information. Plans for future development include: generating tables summarizing the information in the AirDAS file, plotting AirDAS data, and generating files needed for doing density estimation. Learn more in vignette("swfscAirDAS")

Installation

You can install the released version of swfscAirDAS from CRAN with:

r install.packages("swfscAirDAS")

You can install the developmental version of swfscAirDAS from GitHub. To use the development version of swfscAirDAS, it is recommended to install the development version of swfscDAS as well:

``` r

install.packages("pak")

pak::pkginstall("SWFSC/swfscDAS") pak::pkginstall("SWFSC/swfscAirDAS") ```

Please contact the developer if you have any issues.

AirDAS format and checks

swfscAirDAS accepts AirDAS data from several different programs, and thus in several different formats: PHOCOENA, CARETTA, and TURTLE. You can download PDFs describing these formats at the following links:

These PDFs are also included in the package; see airdas_format_pdf for more details.

In addition, the package contains the function airdas_check, which checks whether the provided file adheres to expected format of the provided file type. This function is designed to 1) be used for data QA/QC after performing a survey and 2) ensure the data format meets all of the assumptions made by the rest of the functions in the package. A PDF describing the format checks is included in the package; you can also download the PDF here

Disclaimer

This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.

Owner

  • Name: Southwest Fisheries Science Center
  • Login: SWFSC
  • Kind: organization

GitHub Events

Total
  • Issues event: 8
  • Delete event: 1
  • Issue comment event: 1
  • Push event: 20
  • Pull request event: 1
  • Create event: 1
Last Year
  • Issues event: 8
  • Delete event: 1
  • Issue comment event: 1
  • Push event: 20
  • Pull request event: 1
  • Create event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 237
  • Total Committers: 1
  • Avg Commits per committer: 237.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 5
  • Committers: 1
  • Avg Commits per committer: 5.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Sam Woodman s****3@g****m 237

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 6
  • Total pull requests: 1
  • Average time to close issues: 12 days
  • Average time to close pull requests: 2 minutes
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.17
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 6
  • Pull requests: 1
  • Average time to close issues: 12 days
  • Average time to close pull requests: 2 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.17
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • smwoodman (6)
Pull Request Authors
  • smwoodman (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 203 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
cran.r-project.org: swfscAirDAS

Southwest Fisheries Science Center Aerial DAS Data Processing

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 203 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 39.9%
Downloads: 70.1%
Maintainers (1)
sam.woodman@noaa.gov
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • dplyr * imports
  • lubridate * imports
  • magrittr * imports
  • methods * imports
  • parallel * imports
  • readr * imports
  • rlang * imports
  • stringr * imports
  • swfscDAS >= 0.3.0 imports
  • swfscMisc * imports
  • tidyr * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 2.1.0 suggests
  • tibble * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite