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msSPChelpR

R helper functions for Second Primary Cancer analyses

https://github.com/marianschmidt/msspchelpr

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.8%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

R helper functions for Second Primary Cancer analyses

Basic Info
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 2
  • Open Issues: 21
  • Releases: 5
Created about 7 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.Rmd 

---
output: github_document
---




# msSPChelpR


[![CRAN status](https://www.r-pkg.org/badges/version/msSPChelpR)](https://cran.r-project.org/package=msSPChelpR)
[![](https://img.shields.io/badge/dev%20-0.9.1.9000-green.svg)](https://github.com/marianschmidt/msSPChelpR) 
[![DOI](https://zenodo.org/badge/185602745.svg)](https://zenodo.org/badge/latestdoi/185602745)
[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/last-month/msSPChelpR?color=grey)](https://marianschmidt.github.io/msSPChelpR/)
[![R-CMD-check](https://github.com/marianschmidt/msSPChelpR/workflows/R-CMD-check/badge.svg)](https://github.com/marianschmidt/msSPChelpR/actions)


#### What is `msSPChelpR`?

This package is a collection of helper functions for analyzing Second Primary Cancer (SPC) data, 
including functions to reshape data, to calculate patient states and analyze cancer incidence.


## Installation

You can install the released version of msSPChelpR from [CRAN](https://CRAN.R-project.org) with:

```{r, eval = FALSE}
install.packages("msSPChelpR")
```

And the development version from [GitHub](https://github.com/) with:

```{r, eval = FALSE}
# install.packages("remotes")
remotes::install_github("marianschmidt/msSPChelpR")
```

## How to use the package

An introductory vignette on the workflow of the package can be found [here](https://marianschmidt.github.io/msSPChelpR/articles/introduction.html). See `vignette("introduction")`.

## Citation

In case you want to cite this package, please use `citation('msSPChelpR')` for reference information.

Owner

  • Login: marianschmidt
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 612
  • Total Committers: 3
  • Avg Commits per committer: 204.0
  • Development Distribution Score (DDS): 0.106
Top Committers
Name Email Commits
marianschmidt m****t@g****m 547
marianschmidt m****l@t****e 59
Eberl g****r@m****e 6
Committer Domains (Top 20 + Academic)
mytum.de: 1 tum.de: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 92
  • Total pull requests: 12
  • Average time to close issues: 5 months
  • Average time to close pull requests: 3 days
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.65
  • Average comments per pull request: 0.17
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • marianschmidt (88)
  • markfairbanks (4)
Pull Request Authors
  • marianschmidt (12)
Top Labels
Issue Labels
enhancement (29) bug (14) testing (4) wontfix (2) important (1) question (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 270 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: msSPChelpR

Helper Functions for Second Primary Cancer Analyses

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 270 Last month
Rankings
Forks count: 17.8%
Dependent packages count: 29.8%
Stargazers count: 31.7%
Dependent repos count: 35.5%
Average: 36.2%
Downloads: 66.6%
Maintainers (1)
marian.eberl@tum.de
Last synced: 11 months ago

Dependencies

.github/workflows/check-standard.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 3.5 depends
  • cli * imports
  • dplyr >= 1.0.0 imports
  • lubridate * imports
  • magrittr * imports
  • purrr * imports
  • rlang >= 0.1.2 imports
  • sjlabelled * imports
  • stringr * imports
  • tidyr >= 1.0.0 imports
  • tidyselect * imports
  • tidytable >= 0.9.0 imports
  • haven * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests
  • tibble * suggests