Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Keywords
Repository
R package for simulating rhythmic data
Basic Info
- Host: GitHub
- Owner: hugheylab
- Language: R
- Default Branch: master
- Homepage: https://simphony.hugheylab.org
- Size: 18.2 MB
Statistics
- Stars: 3
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
simphony
simphony simulates large-scale, rhythmic data, including transcriptome data and behavioral activity data. For technical details on how we designed and validated simphony, check out the paper and the accompanying results.
Installation
Option 1: CRAN
r
install.packages('simphony')
Option 2: Hughey Lab Drat Repository
Install
BiocManager.r if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager')If you use RStudio, go to Tools → Global Options... → Packages → Add... (under Secondary repositories), then enter:
- Name: hugheylab
- Url: https://hugheylab.github.io/drat/
You only have to do this once. Then you can install or update the package by entering:
```r
BiocManager::install('simphony')
```
Alternatively, you can install or update the package by entering:
```r
BiocManager::install('simphony', site_repository = 'https://hugheylab.github.io/drat/')
```
Usage
For an introduction to the package, read the introductory vignette. To explore more of simphony's capabilities, check out the example vignette. For more details, check out the reference documentation.
Owner
- Name: Hughey Lab
- Login: hugheylab
- Kind: organization
- Website: https://hugheylab.org
- Repositories: 19
- Profile: https://github.com/hugheylab
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jake Hughey | j****y@g****m | 112 |
| jordan-singer | j****r@g****m | 106 |
| Josh Schoenbachler | j****r@g****m | 30 |
| Darwin Fu | d****u@g****m | 9 |
| Darwin Fu | d****n@d****u | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 44
- Total pull requests: 39
- Average time to close issues: 26 days
- Average time to close pull requests: 2 days
- Total issue authors: 3
- Total pull request authors: 4
- Average comments per issue: 0.64
- Average comments per pull request: 1.26
- Merged pull requests: 36
- Bot issues: 8
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- ZackAttack614 (20)
- jakejh (16)
- github-actions[bot] (8)
Pull Request Authors
- jakejh (15)
- JSchoenbachler (12)
- ZackAttack614 (10)
- darwinyfu (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 277 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
cran.r-project.org: simphony
Simulating Large-Scale, Rhythmic Data
- Homepage: https://simphony.hugheylab.org
- Documentation: http://cran.r-project.org/web/packages/simphony/simphony.pdf
- License: GPL-2
-
Latest release: 1.0.3
published over 3 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.4 depends
- data.table >= 1.11.4 imports
- foreach >= 1.4.4 imports
- ggplot2 >= 3.0.0 suggests
- kableExtra >= 0.9.0 suggests
- knitr >= 1.20 suggests
- limma >= 3.34.9 suggests
- precrec >= 0.9.1 suggests
- rmarkdown >= 1.9 suggests
- testthat >= 2.0.0 suggests