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voluModel

R package for distributional modeling in 3 dimensions

https://github.com/hannahlowens/volumodel

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 7 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (18.5%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

R package for distributional modeling in 3 dimensions

Basic Info
Statistics
  • Stars: 9
  • Watchers: 2
  • Forks: 2
  • Open Issues: 2
  • Releases: 12
Created over 4 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct

README.md

voluModel

R-CMD-check Project Status: Active – The project has reached a stable, usable state and is being actively developed. Codecov test coverage cran version DOI rstudio mirror downloads

Summary

This package is designed to facilitate modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column.

Please cite voluModel. Run the following to get the appropriate citation for the version you’re using:

r citation(package = "voluModel") ## Owens H, Sheahan E, Rahbek C (2025). voluModel: Modeling Species Distributions in Three Dimensions. doi: ## 10.5281/zenodo.7813394 (URL: https://doi.org/10.5281/zenodo.7813394), R package version 0.2.3, . ## ## A BibTeX entry for LaTeX users is ## ## @Manual{, ## title = {{voluModel}: Modeling Species Distributions in Three Dimensions}, ## author = {Hannah L. Owens and Emmaline Sheahan and Carsten Rahbek}, ## year = {2025} ## note = {R package version 0.2.3}, ## url = {http://CRAN.R-project.org/package=voluModel}, ## doi = {10.5281/zenodo.5792654}, ## }

Installation

r install.packages("voluModel")

Or, install GitHub development version (version 0.2.4):

r devtools::install_github("hannahlowens/voluModel", build_vignettes = TRUE)

Getting Started

  1. Introduction
  2. Processing Rasters
  3. Sampling Environtmental Data in 3D
  4. Visualization Tools
  5. Generalized Linear Model Workflow

Meta

  • Please report any issues or bugs.
  • License: GPL-3
  • Get citation information for voluModel in R using citation(package = 'voluModel')

Acknowledgements

EU flag

  • This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 891702.

Owner

  • Name: Hannah Owens
  • Login: hannahlowens
  • Kind: user
  • Location: Copenhagen, Denmark
  • Company: University of Copenhagen

Postdoc Center for Macroecology, Evolution and Climate GLOBE Institute

GitHub Events

Total
  • Issues event: 3
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 21
  • Pull request review event: 2
  • Pull request review comment event: 2
  • Pull request event: 3
  • Fork event: 2
Last Year
  • Issues event: 3
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 21
  • Pull request review event: 2
  • Pull request review comment event: 2
  • Pull request event: 3
  • Fork event: 2

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 431
  • Total Committers: 1
  • Avg Commits per committer: 431.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 16
  • Committers: 1
  • Avg Commits per committer: 16.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
hannahlowens h****s@g****m 431

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 7
  • Total pull requests: 4
  • Average time to close issues: about 1 year
  • Average time to close pull requests: about 9 hours
  • Total issue authors: 3
  • Total pull request authors: 2
  • Average comments per issue: 1.14
  • Average comments per pull request: 0.75
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 6 minutes
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.67
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • hannahlowens (6)
  • teunbrand (1)
  • EmmalineSheahan (1)
Pull Request Authors
  • hannahlowens (4)
  • EmmalineSheahan (2)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 281 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 11
  • Total maintainers: 1
cran.r-project.org: voluModel

Modeling Species Distributions in Three Dimensions

  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 281 Last month
Rankings
Stargazers count: 21.1%
Forks count: 28.8%
Dependent packages count: 29.8%
Average: 32.4%
Dependent repos count: 35.5%
Downloads: 47.1%
Maintainers (1)
hannah.owens@gmail.com
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • dismo * imports
  • dplyr * imports
  • fields * imports
  • ggplot2 * imports
  • ggtext * imports
  • grDevices * imports
  • latticeExtra * imports
  • methods * imports
  • rangeBuilder * imports
  • raster * imports
  • rgeos * imports
  • sp * imports
  • terra * imports
  • viridisLite * imports
  • covr * suggests
  • gridExtra * suggests
  • knitr * suggests
  • nlme * suggests
  • rgdal * suggests
  • rmarkdown * suggests
  • rnaturalearth * suggests
  • rnaturalearthdata * suggests
  • testthat >= 3.0.0 suggests
  • tibble * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite