Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 8 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.1%) to scientific vocabulary
Keywords
Repository
Statistical analysis for spatial omics data
Basic Info
- Host: GitHub
- Owner: stevexniu
- License: gpl-3.0
- Language: R
- Default Branch: main
- Homepage: https://stevexniu.github.io/spots/
- Size: 38.2 MB
Statistics
- Stars: 10
- Watchers: 2
- Forks: 2
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
spots: Spatial Component Analysis 
The spots package is designed for spatial omics (10x Visium, etc.) data analysis.
It performs various statistical analyses and tests, including spatial component analysis (SCA), both global and local spatial statistics, such as univariate and bivariate Moran's I, Getis-Ord Gi* statistics, etc.
See Integrated protein and transcriptome high-throughput spatial profiling (2022) for more details.
Installation
Install from CRAN release:
r
install.packages("spots")
Install from Github:
r
install.packages("devtools")
devtools::install_github("stevexniu/spots")
Install the light-weight spots-feather without eign decomposition (SCA functionality).
r
install.packages("devtools")
devtools::install_github("stevexniu/spots", ref = "feather")
Usage
See tutorials:
Citation
You can cite spots using this DOI:
© X. Steve Niu from Landau Lab, Weill Cornell Medicine and New York Genome Center
Owner
- Name: Steve Niu
- Login: stevexniu
- Kind: user
- Location: NYC
- Company: Tri-Institutional PhD Program in Computational Biology & Medicine
- Twitter: stevexniu
- Repositories: 2
- Profile: https://github.com/stevexniu
PhD student at Weill Cornell Medicine
GitHub Events
Total
Last Year
Packages
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
cran.r-project.org: spots
Spatial Component Analysis
- Documentation: http://cran.r-project.org/web/packages/spots/spots.pdf
- License: GPL-3
- Status: removed
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Latest release: 0.1.0
published almost 4 years ago
Rankings
Dependencies
- R >= 4.0.0 depends
- Matrix * imports
- RSpectra * imports
- methods * imports
- stats * imports
- tools * imports
- utils * imports
- ape * suggests
- covr * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests