RGraphSpace
A lightweight package for representing large igraph objects in a normalized coordinate system
Science Score: 39.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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✓DOI references
Found 5 DOI reference(s) in README -
○Academic publication links
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Repository
A lightweight package for representing large igraph objects in a normalized coordinate system
Basic Info
- Host: GitHub
- Owner: sysbiolab
- Language: R
- Default Branch: main
- Size: 153 KB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
RGraphSpace: A lightweight interface between 'ggplot2' and 'igraph' objects.
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RGraphSpace is an R package that integrates igraph and ggplot2 graphics within spatial maps. RGraphSpace implements new geometric objects using ggplot2 prototypes, customized for representing large igraph objects in a normalized coordinate system. By scaling shapes and graph elements, RGraphSpace can provide a framework for layered visualizations.
Installation in R (>=4.4)
Install dependencies to build the package's vignettes
r
install.packages("knitr")
install.packages("rmarkdown")
Install the RGraphSpace package
r
install.packages("remotes")
remotes::install_github("sysbiolab/RGraphSpace", build_vignettes=TRUE)
Examples
Follow the RGraphSpace vignette and try to make some plots!
r
library(RGraphSpace)
vignette("RGraphSpace")
Citation
If you use RGraphSpace, please cite:
Sysbiolab Team. "RGraphSpace: A lightweight package for representing large igraph objects in a normalized coordinate system". R package, 2023. Doi: 10.32614/CRAN.package.RGraphSpace
Castro MAA, Wang X, Fletcher MNC, Meyer KB, Markowetz F. "RedeR: R/Bioconductor package for representing modular structures nested networks and multiple levels of hierarchical associations". Genome Biology 13:R29, 2012. Doi: 10.1186/gb-2012-13-4-r29
Licenses
The RGraphSpace package is distributed under Artistic-2.0
GitHub Events
Total
- Watch event: 1
- Push event: 7
Last Year
- Watch event: 1
- Push event: 7
Packages
- Total packages: 1
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Total downloads:
- cran 248 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: RGraphSpace
A Lightweight Interface Between 'ggplot2' and 'igraph' Objects
- Homepage: https://github.com/sysbiolab/RGraphSpace
- Documentation: http://cran.r-project.org/web/packages/RGraphSpace/RGraphSpace.pdf
- License: Artistic-2.0
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Latest release: 1.0.9
published 11 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.2 depends
- ggplot2 * depends
- igraph * depends
- methods * depends
- grDevices * imports
- grid * imports
- scales * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- PathwaySpace * suggests
- RUnit * suggests
- RedeR * suggests
- knitr * suggests
- rmarkdown * suggests