zoid

Trinomial mixture models in Stan, for fitting to compositional data with 0s

https://github.com/noaa-nwfsc/zoid

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    4 of 6 committers (66.7%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (14.1%) to scientific vocabulary

Keywords

cran mixture-models nwfsc-cb r-package stan

Keywords from Contributors

ecology extremes spatial-analysis spatiotemporal multivariate-timeseries state-space-models
Last synced: 6 months ago · JSON representation

Repository

Trinomial mixture models in Stan, for fitting to compositional data with 0s

Basic Info
Statistics
  • Stars: 9
  • Watchers: 9
  • Forks: 3
  • Open Issues: 1
  • Releases: 2
Topics
cran mixture-models nwfsc-cb r-package stan
Created over 4 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.Rmd

---
output: github_document
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-figs/",
  cache.path = "README-cache/"
)
```

# ZOID

  
[![R-CMD-check](https://github.com/noaa-nwfsc/zoid/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/noaa-nwfsc/zoid/actions/workflows/R-CMD-check.yaml)
  
  
zoid implements zero-and-one inflated Dirichlet regression (also known as trinomial mixture models) in a Bayesian framework (Stan)

You can view the pkgdown package information here: [https://noaa-nwfsc.github.io/zoid/](https://noaa-nwfsc.github.io/zoid/)

You can install the development version of the package with:

```{r, eval=FALSE}
remotes::install_github("noaa-nwfsc/zoid")
```

### NOAA Disclaimer 

This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an as is basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.

NOAA Fisheries

[U.S. Department of Commerce](https://www.commerce.gov/) | [National Oceanographic and Atmospheric Administration](https://www.noaa.gov) | [NOAA Fisheries](https://www.fisheries.noaa.gov/)

Owner

  • Name: Northwest Fisheries Science Center
  • Login: noaa-nwfsc
  • Kind: organization

NWFSC's Repositories

GitHub Events

Total
  • Watch event: 1
  • Member event: 1
  • Issue comment event: 1
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 3
  • Fork event: 1
Last Year
  • Watch event: 1
  • Member event: 1
  • Issue comment event: 1
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 3
  • Fork event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 58
  • Total Committers: 6
  • Avg Commits per committer: 9.667
  • Development Distribution Score (DDS): 0.276
Past Year
  • Commits: 20
  • Committers: 4
  • Avg Commits per committer: 5.0
  • Development Distribution Score (DDS): 0.55
Top Committers
Name Email Commits
ericward-noaa e****d@n****v 42
Eric Ward 5****a 11
Eli Holmes - NOAA e****s@n****v 2
Andrew Johnson a****n@a****m 1
OleShelton o****n@n****v 1
Will Satterthwaite w****e@n****v 1
Committer Domains (Top 20 + Academic)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 199 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: zoid

Bayesian Zero-and-One Inflated Dirichlet Regression Modelling

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 199 Last month
Rankings
Forks count: 17.8%
Stargazers count: 21.1%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Average: 37.4%
Downloads: 83.1%
Maintainers (1)
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.4.0 depends
  • Rcpp >= 0.12.0 imports
  • RcppParallel >= 5.0.1 imports
  • compositions * imports
  • gtools * imports
  • methods * imports
  • rstan >= 2.18.1 imports
  • rstantools >= 2.1.1 imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite