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statgenGxE

See https://biometris.github.io/statgenGxE for a full description

https://github.com/biometris/statgengxe

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.9%) to scientific vocabulary

Keywords

cran genetics gxe gxe-modelling multi-trial-analysis r-package
Last synced: 6 months ago · JSON representation

Repository

See https://biometris.github.io/statgenGxE for a full description

Basic Info
Statistics
  • Stars: 11
  • Watchers: 4
  • Forks: 8
  • Open Issues: 2
  • Releases: 0
Topics
cran genetics gxe gxe-modelling multi-trial-analysis r-package
Created over 5 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "75%"
)
```

# statgenGxE

[![](https://www.r-pkg.org/badges/version/statgenGxE)](https://www.r-pkg.org/pkg/statgenGxE)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/statgenGxE)](https://www.r-pkg.org/pkg/statgenGxE)
[![R-CMD-check](https://github.com/Biometris/statgenGxE/actions/workflows/check.yaml/badge.svg)](https://github.com/Biometris/statgenGxE/actions/workflows/check.yaml)
[![codecov](https://codecov.io/gh/Biometris/statgenGxE/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Biometris/statgenGxE)

**statgenGxE** is an R package providing functions for Genotype by Environment (GxE) analysis for data of plant breeding experiments.  

The following types of analysis can be done using statgenGxE:

* Mixed model analysis of GxE table of means
* Finlay-Wilkinson Analysis
* AMMI Analysis
* GGE Analysis
* Identifying mega environments
* Stability measures
* Modeling of heterogeneity of genetic variances and correlations

statgenGxE has extensive options for summarizing and visualizing the results of the analyses. For a full overview of all options it is best to read the [**vignette**](https://biometris.github.io/statgenGxE/articles/statgenGxE.html)

## Installation

* Install from CRAN:

```{r, eval = FALSE}
install.packages("statgenGxE")
```

* Install latest development version from GitHub (requires [remotes](https://github.com/r-lib/remotes) package):

```{r, eval = FALSE}
remotes::install_github("Biometris/statgenGxE", ref = "develop", dependencies = TRUE)

Owner

  • Name: Wageningen Universtiy & Research, Biometris
  • Login: Biometris
  • Kind: organization
  • Email: biometris@wur.nl
  • Location: Wageningen, The Netherlands

Biometris develops statistical and mathematical methods for the quantification of biological processes and processes in our living environment.

GitHub Events

Total
  • Issues event: 1
  • Watch event: 3
  • Issue comment event: 2
  • Push event: 11
  • Pull request event: 1
  • Fork event: 2
Last Year
  • Issues event: 1
  • Watch event: 3
  • Issue comment event: 2
  • Push event: 11
  • Pull request event: 1
  • Fork event: 2

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 939
  • Total Committers: 3
  • Avg Commits per committer: 313.0
  • Development Distribution Score (DDS): 0.006
Top Committers
Name Email Commits
Bart-Jan van Rossum b****m@w****l 933
Bustos Korts, Daniela d****s@w****l 3
Verouden, Maikel m****n@w****l 3
Committer Domains (Top 20 + Academic)
wur.nl: 3

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 3
  • Total pull requests: 1
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 21 hours
  • Total issue authors: 3
  • Total pull request authors: 1
  • Average comments per issue: 1.67
  • Average comments per pull request: 2.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 11 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • yan-cheng-lin (1)
  • teunbrand (1)
  • mariachiarapiro (1)
Pull Request Authors
  • Mturbetdelof (1)
  • igorkf (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 474 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 9
  • Total maintainers: 1
cran.r-project.org: statgenGxE

Genotype by Environment (GxE) Analysis

  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 474 Last month
  • Docker Downloads: 21,613
Rankings
Forks count: 12.8%
Stargazers count: 24.2%
Average: 27.5%
Dependent packages count: 29.8%
Downloads: 35.4%
Dependent repos count: 35.5%
Maintainers (1)
bart-jan.vanrossum@wur.nl
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.3 depends
  • emmeans * imports
  • ggplot2 >= 3.3.0 imports
  • gridExtra * imports
  • knitr * imports
  • lme4 * imports
  • methods * imports
  • statgenSTA >= 1.0.6 imports
  • xtable * imports
  • asreml >= 3.0 suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
  • r-lib/actions/setup-tinytex v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action 4.1.4 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite