Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
2 of 13 committers (15.4%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (13.7%) to scientific vocabulary
Keywords
dating-software
evolution
phylogenetics
r
reproducible-research
Keywords from Contributors
biology
phylogeny
taxonomy
bioinformatics
nomenclature
taxize
biodiversity
darwincore
carpentries
genome
Last synced: 6 months ago
·
JSON representation
Repository
R package containing datelife's core functionality
Basic Info
- Host: GitHub
- Owner: phylotastic
- Language: R
- Default Branch: master
- Homepage: http://phylotastic.org/datelife/
- Size: 241 MB
Statistics
- Stars: 12
- Watchers: 6
- Forks: 11
- Open Issues: 54
- Releases: 8
Topics
dating-software
evolution
phylogenetics
r
reproducible-research
Created over 10 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
README.Rmd
---
output: github_document
---
```{r setup, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
results = "asis",
echo = TRUE,
comment = "#>",
fig.path = "vignettes/figures/README-",
out.width = "100%"
)
IS_README <- TRUE
library(datelife)
if (!requireNamespace("versions")) {
install.packages("versions")
}
on_cran <- FALSE
cran_checks_badge <- "[](https://cran.r-project.org/web/checks/check_results_phylotastic/datelife.html)"
cran_checks_archived <- "https://cran.r-project.org/web/checks/check_results_phylotastic/datelife.html"
# not used for now
website_down <- TRUE
```
```{r, child = "pkgdown/badges.Rmd"}
```
# Welcome to DateLife's R package GitHub repository!
```{r, child = "pkgdown/presentation.Rmd"}
```
To learn more, please go to
[`datelife`'s documentation website](http://phylotastic.org/datelife/index.html).
## README topics:
- [Installation](#installation)
- [Citation](#citation)
- [Feedback and info for developers](#feedback)
- [License](#license)
```{r, child = "pkgdown/installation.Rmd"}
```
```{r, child = "pkgdown/citation.Rmd"}
```
```{r, child = "pkgdown/dev.Rmd"}
```
```{r, child = "pkgdown/license.Rmd"}
```
```{r, child = "pkgdown/funding.Rmd"}
```
Owner
- Name: phylotastic
- Login: phylotastic
- Kind: organization
- Website: http://phylotastic.org
- Repositories: 27
- Profile: https://github.com/phylotastic
GitHub Events
Total
- Fork event: 1
Last Year
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Luna Sare | s****a@g****m | 703 |
| Brian O'Meara | o****n@g****m | 430 |
| Luna Luisa Sanchez Reyes | l****a@i****l | 13 |
| Luna Luisa Sanchez Reyes | l****a@L****l | 10 |
| Tracy Heath | t****h@b****u | 8 |
| Peter Midford | p****d@g****m | 7 |
| schamberlain | m****s@g****m | 7 |
| snacktavish | e****h@g****m | 5 |
| Joseph Brown | p****b@g****m | 4 |
| François Michonneau | f****u@g****m | 2 |
| Brian O'Meara | b****a@o****u | 1 |
| Katrin Leinweber | k****i@p****e | 1 |
| KlausVigo | k****p@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 85
- Total pull requests: 11
- Average time to close issues: 11 months
- Average time to close pull requests: 16 days
- Total issue authors: 9
- Total pull request authors: 4
- Average comments per issue: 0.94
- Average comments per pull request: 0.91
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 9
- Pull requests: 3
- Average time to close issues: 2 months
- Average time to close pull requests: about 1 month
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 1.44
- Average comments per pull request: 0.67
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- LunaSare (44)
- bomeara (25)
- snacktavish (8)
- arlin (3)
- uyedaj (1)
- vsbuffalo (1)
- ducvan0212 (1)
- hdliv (1)
- irmoodie (1)
Pull Request Authors
- LunaSare (7)
- snacktavish (2)
- katrinleinweber (1)
- fmichonneau (1)
Top Labels
Issue Labels
enhancement (11)
bug (4)
in progress (1)
wontfix (1)
question (1)
help wanted (1)
invalid (1)
in review (1)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 505 last-month
- Total dependent packages: 0
- Total dependent repositories: 3
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: datelife
Scientific Data on Time of Lineage Divergence for Your Taxa
- Homepage: https://github.com/phylotastic/datelife
- Documentation: http://cran.r-project.org/web/packages/datelife/datelife.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
- Status: removed
-
Latest release: 0.6.8
published over 2 years ago
Rankings
Forks count: 8.0%
Stargazers count: 15.9%
Dependent repos count: 16.7%
Average: 21.5%
Dependent packages count: 29.0%
Downloads: 37.9%
Maintainers (1)
Last synced:
over 1 year ago
Dependencies
DESCRIPTION
cran
- R >= 3.6.0 depends
- BiocManager * imports
- abind * imports
- ape * imports
- bold * imports
- cluster * imports
- compare * imports
- data.table * imports
- geiger * imports
- httr * imports
- ips * imports
- knitcitations * imports
- paleotree * imports
- phangorn * imports
- phylobase * imports
- phylocomr * imports
- phytools * imports
- plyr * imports
- rotl * imports
- stats * imports
- stringr * imports
- taxize * imports
- treebase * imports
- utils * imports
- Biostrings * suggests
- covr * suggests
- devtools * suggests
- knitr * suggests
- msa * suggests
- rmarkdown * suggests
- testthat * suggests
- usethis * suggests
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite