movedesign

An application designed to help researchers plan animal tracking projects tailored to their specific research questions.

https://github.com/ecoisilva/movedesign

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
○
Academic publication links
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Committers with academic emails
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (20.0%) to scientific vocabulary

Keywords

animal-behavior animal-movement animal-tracking ecology experimental-design movement-ecology r shiny shiny-apps study-design

Last synced: 6 months ago · JSON representation

Repository

An application designed to help researchers plan animal tracking projects tailored to their specific research questions.

Basic Info

Host: GitHub
Owner: ecoisilva
License: gpl-3.0
Language: R
Default Branch: main
Homepage: https://ecoisilva.github.io/movedesign/
Size: 28.5 MB

Statistics

Stars: 13
Watchers: 1
Forks: 1
Open Issues: 1
Releases: 3

Topics

animal-behavior animal-movement animal-tracking ecology experimental-design movement-ecology r shiny shiny-apps study-design

Created almost 4 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog License

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# movedesign 



[![CRAN version](https://img.shields.io/cran/v/movedesign?color=%23009da0&label=CRAN%20version)](https://CRAN.R-project.org/package=movedesign) [![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.7963190-green?color=%23009da0)](https://doi.org/10.5281/zenodo.7963190) 

[![Project Status: Active  The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![R-CMD-check](https://github.com/ecoisilva/movedesign/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ecoisilva/movedesign/actions/workflows/R-CMD-check.yaml)
[![Hits](https://hits.sh/github.com/ecoisilva/hits.svg)](https://hits.sh/github.com/ecoisilva/movedesign/) 









## Overview

::: {style="text-align: justify"}
The `movedesign` `R` package and `Shiny` application are designed to support researchers in the planning and evaluation of movement ecology studies, focusing on two key targets: estimating home range areas, and estimating movement speed and distance traveled.

Movement ecology studies frequently make use of data collected from animal tracking projects. Planning a successful animal tracking project requires careful consideration and clear objectives. It is crucial to plan ahead and understand how much data is required to accurately answer your chosen research questions, and choose the optimal tracking regime/schedule.

To assist with study design, `movedesign` integrates the continuous-time methods available with the [`ctmm`](https://ctmm-initiative.github.io/ctmm/) `R` package. Animal movement is inherently autocorrelated (locations are similar as a function of space and time) and the `ctmm` package allows us to model these data as continuous-time stochastic processes, while dealing with other known biases (such as small sample sizes, irregular or missing data, and location error).

This app was built using the `golem` framework.

## Installation:

To install the stable version of `movedesign` from CRAN:

``` r
install.packages("movedesign")
```

To install the most recent development version directly from GitHub:
```r
install.packages("remotes")
remotes::install_github("ecoisilva/movedesign")
```

If you encounter any issues, consult the installation troubleshooting [vignette](https://ecoisilva.github.io/movedesign/articles/installation.html) for potential solutions.

## Running the application:

To launch `movedesign`, load the library and run the following command in your `R` console:

``` r
library(movedesign)
movedesign::run_app()
```


## Using the application:

Start with the guided tutorial in the `'Home'` tab. For a more detailed introduction, refer to the [vignettes](https://ecoisilva.github.io/movedesign/articles/movedesign.html) or the manuscripts (references below).




## Getting help:

If you encounter a bug, please [submit an issue](https://github.com/ecoisilva/movedesign/issues). For more general questions and suggestions, contact [Ins Silva](mailto:i.simoes-silva@hzdr.de?subject=%5Bmovedesign%5D).

## Citation:

To cite `movedesign`, use the following:

``` r
citation("movedesign")
```

> Silva, I., Fleming, C. H., Noonan, M. J., Fagan, W. F., & Calabrese, J. M. (2023). movedesign: Shiny R app to evaluate sampling design for animal movement studies. Methods in Ecology and Evolution, 14(9), 22162225. DOI: 10.1111/2041-210X.14153

:::

Owner

Name: Inês Silva
Login: ecoisilva
Kind: user
Location: Germany
Company: CASUS - HZDR

Twitter: ecoisilva
Repositories: 3
Profile: https://github.com/ecoisilva

GitHub Events

Total

Create event: 1
Release event: 1
Issues event: 2
Watch event: 3
Issue comment event: 2
Push event: 124
Fork event: 1

Last Year

Create event: 1
Release event: 1
Issues event: 2
Watch event: 3
Issue comment event: 2
Push event: 124
Fork event: 1

Committers

Last synced: over 1 year ago

All Time

Total Commits: 194
Total Committers: 3
Avg Commits per committer: 64.667
Development Distribution Score (DDS): 0.144

Past Year

Commits: 51
Committers: 2
Avg Commits per committer: 25.5
Development Distribution Score (DDS): 0.49

Top Committers

Name	Email	Commits
Inês	i**a@g**m	166
ecoisilva	i**a@h**e	26
Simoes Silva	s**8@a**e	2

Committer Domains (Top 20 + Academic)

ad.fz-rossendorf.de: 1 hzdr.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 5
Total pull requests: 0
Average time to close issues: 3 months
Average time to close pull requests: N/A
Total issue authors: 4
Total pull request authors: 0
Average comments per issue: 1.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

Lisark45 (2)
jmsigner (1)
integratecology (1)
Xacfran (1)

Pull Request Authors

Top Labels

Issue Labels

documentation (1) question (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 149 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 2
Total maintainers: 1

cran.r-project.org: movedesign

Study Design Toolbox for Movement Ecology Studies

Homepage: https://ecoisilva.github.io/movedesign/
Documentation: http://cran.r-project.org/web/packages/movedesign/movedesign.pdf
License: GPL (≥ 3)
Latest release: 0.3.2
published 7 months ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 149 Last month

Rankings

Dependent packages count: 26.2%

Dependent repos count: 32.2%

Average: 48.3%

Downloads: 86.5%

Maintainers (1)

i.simoes-silva@hzdr.de

Last synced: 6 months ago

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
bayestestR * imports
bsplus * imports
config >= 0.3.1 imports
crayon * imports
ctmm >= 0.6.1 imports
data.table * imports
dplyr * imports
fontawesome * imports
ggiraph * imports
ggplot2 * imports
golem >= 0.3.2 imports
minpack.lm * imports
pkgload * imports
plyr * imports
reactable * imports
rintrojs * imports
scales * imports
shiny >= 1.7.1 imports
shinyFeedback * imports
shinyWidgets * imports
shinyalert * imports
shinybusy * imports
shinycssloaders * imports
shinydashboard * imports
shinydashboardPlus * imports
shinyjs * imports
stats * imports
stringr * imports
utils * imports
viridis * imports
covr * suggests
knitr * suggests
rmarkdown * suggests
shinytest2 * suggests
testthat >= 3.0.0 suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action 4.1.4 composite
actions/checkout v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pr-commands.yaml actions

actions/checkout v3 composite
r-lib/actions/pr-fetch v2 composite
r-lib/actions/pr-push v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

ecosyste.ms

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Open Source Science

movedesign

Science Score: 39.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.Rmd

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

cran.r-project.org: movedesign

Rankings

Maintainers (1)

Dependencies