treatmentpatterns
An R package to analyze treatment patterns of a study population of interest
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
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○Scientific vocabulary similarity
Low similarity (7.4%) to scientific vocabulary
Last synced: 10 months ago
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Repository
An R package to analyze treatment patterns of a study population of interest
Basic Info
- Host: GitHub
- Owner: darwin-eu
- License: apache-2.0
- Language: R
- Default Branch: main
- Homepage: https://darwin-eu.github.io/TreatmentPatterns/
- Size: 19.7 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 3
- Open Issues: 2
- Releases: 11
Fork of darwin-eu-dev/TreatmentPatterns
Created about 2 years ago
· Last pushed 10 months ago
https://github.com/darwin-eu/TreatmentPatterns/blob/main/
# TreatmentPatterns
[](https://lifecycle.r-lib.org/articles/stages.html#stable)
[](https://github.com/darwin-eu-dev/TreatmentPatterns/actions/workflows/R-CMD-check.yaml)
[](https://CRAN.R-project.org/package=TreatmentPatterns)
[](https://app.codecov.io/gh/darwin-eu-dev/TreatmentPatterns?branch=master)
## Supported Databases
| Database | DatabaseConnector (JDBC) | CDMConnector (ODBC) |
|----|----|----|
| PostgreSQL |  |  |
| SQL Server |  |  |
| Snowflake |  |  |
| Oracle |  | |
| Redshift |  |  |
| Spark |  |  |
| Iris | \* | |
| BigQuery |  | |
*\*Faulty Test Environment*
[*Markus A, Verhamme K, Kors J, Rijnbeek P (2022). TreatmentPatterns:
An R package to facilitate the standardized development and analysis of
treatment patterns across disease domains. Computer Methods and
Programs in Biomedicine.*](https://doi.org/10.1016/j.cmpb.2022.107081)
This R package contains the resources for performing a treatment pathway
analysis of a study population of interest in observational databases.
The package partially relies on the Observational Medical Outcomes
Partnership Common Data Model (OMOP CDM), but the main parts of the
package are also usable with different data formats.
## Features
- Compatible with JSON, SQL, or [`CapR`](https://ohdsi.github.io/Capr/)
cohorts.
- Compatible with
[`DatabaseConnector`](https://ohdsi.github.io/DatabaseConnector/),
[`CohortGenerator`](https://ohdsi.github.io/CohortGenerator/), and
[`CDMConnector`](https://darwin-eu.github.io/CDMConnector/).
- Stratification by **age**, **sex**, and **index year**.
- Treatment type agnostic.
- Full control over treatment pathway definition:
1. Duration of treatments
2. Overlap of treatments
3. Gaps between treatments
- Intermediate patient level results can be reviewed, aggregate data can
be shared.
- Easily integrate Sankey diagrams and sunburst plots (`htmlWidget`)
into ShinyApps or web-pages.
## Installation
You can install the most recently released CRAN version of
TreatmentPatterns with:
``` r
install.packages("TreatmentPatterns")
```
Or from GitHub with:
``` r
remotes::install_github("darwin-eu-dev/TreatmentPatterns")
```
You can install the development version of TreatmentPatterns from
[GitHub](https://github.com/) with:
``` r
install.packages("remotes")
remotes::install_github("darwin-eu-dev/TreatmentPatterns@dev")
```
Owner
- Name: Darwin EU® Public Code Repository
- Login: darwin-eu
- Kind: organization
- Email: enquiries@darwin-eu.org
- Location: Netherlands
- Repositories: 4
- Profile: https://github.com/darwin-eu
DARWIN EU® will deliver real-world evidence from across Europe on diseases, populations and the uses and performance of medicines.
GitHub Events
Total
- Create event: 10
- Issues event: 12
- Release event: 5
- Delete event: 1
- Issue comment event: 33
- Push event: 20
- Gollum event: 1
- Fork event: 4
Last Year
- Create event: 10
- Issues event: 12
- Release event: 5
- Delete event: 1
- Issue comment event: 33
- Push event: 20
- Gollum event: 1
- Fork event: 4
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 6
- Total pull requests: 0
- Average time to close issues: 17 days
- Average time to close pull requests: N/A
- Total issue authors: 5
- Total pull request authors: 0
- Average comments per issue: 0.83
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 0
- Average time to close issues: 17 days
- Average time to close pull requests: N/A
- Issue authors: 5
- Pull request authors: 0
- Average comments per issue: 0.83
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- ZorzArg (2)
- mdlavallee92 (1)
- ob325 (1)
- ablack3 (1)
- katy-sadowski (1)
- schuemie (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 370 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 20
- Total maintainers: 1
cran.r-project.org: TreatmentPatterns
Analyzes Real-World Treatment Patterns of a Study Population of Interest
- Homepage: https://github.com/darwin-eu/TreatmentPatterns
- Documentation: http://cran.r-project.org/web/packages/TreatmentPatterns/TreatmentPatterns.pdf
- License: Apache License (≥ 2)
-
Latest release: 3.1.1
published 10 months ago
Rankings
Forks count: 17.5%
Dependent packages count: 28.6%
Stargazers count: 31.5%
Dependent repos count: 36.9%
Average: 40.6%
Downloads: 88.3%
Maintainers (1)
Last synced:
10 months ago