manta
Non-parametric, asymptotic P-value computation for multivariate linear models
Science Score: 13.0%
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Repository
Non-parametric, asymptotic P-value computation for multivariate linear models
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- Stars: 9
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Metadata Files
README.md
MANTA 
The Multivariate Asymptotic Non-parametric Test of Association (MANTA) enables non-parametric, asymptotic P-value computation for multivariate linear models.
Installation
```r
install.packages("devtools")
devtools::install_github("dgarrimar/manta") ```
R 3.3.2 or higher is required.
Usage
```r library(manta) manta(biomarkers ~ ., data = patients)
>
> Call:
> manta(formula = biomarkers ~ ., data = patients)
>
> Type II Sum of Squares
>
> Df Sum Sq Mean Sq F value R2 Pr(>F)
> age 1 400.6 400.63 7.3566 0.04242 0.001685 **
> gender 1 34.3 34.28 0.6295 0.00363 0.5144
> status 2 2152.7 1076.33 19.7643 0.22793 1.348e-12 ***
> Residuals 91 4955.7 54.46
> ---
> Signif. codes: 0 '**' 0.001 '' 0.01 '' 0.05 '.' 0.1 ' ' 1
> 4 observations deleted due to missingness
```
Cite MANTA
If you find MANTA useful in your research please cite the related publication:
Garrido-Martín, D., Calvo, M., Reverter, F., Guigó, R. A fast non-parametric test of association for multiple traits. Genome Biol 24, 230 (2023). https://doi.org/10.1186/s13059-023-03076-8
Owner
- Name: Diego Garrido-Martín
- Login: dgarrimar
- Kind: user
- Location: Barcelona, Spain
- Company: Centre for Genomic Regulation (CRG)
- Repositories: 2
- Profile: https://github.com/dgarrimar
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- Watch event: 2
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- Total packages: 1
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- Total dependent packages: 0
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- Total versions: 2
- Total maintainers: 1
cran.r-project.org: manta
Multivariate Asymptotic Non-Parametric Test of Association
- Homepage: https://github.com/dgarrimar/manta
- Documentation: http://cran.r-project.org/web/packages/manta/manta.pdf
- License: GPL-3
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Latest release: 1.0.1
published over 2 years ago