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toolstability

r package for calculating stability indices

https://github.com/illustratien/toolstability

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 8 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: springer.com, nature.com, zenodo.org
  • ✓
    Committers with academic emails
    3 of 6 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.7%) to scientific vocabulary

Keywords

analysis-package r reproducible-research stability
Last synced: 6 months ago · JSON representation

Repository

r package for calculating stability indices

Basic Info
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 3
Topics
analysis-package r reproducible-research stability
Created over 6 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: rmarkdown::github_document
always_allow_html: true
---


```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  fig.path = "inst/extdata/"
)
```

## `toolStability`: Tool for Stability Indices Calculation  logo

```{r,echo = FALSE, message = FALSE}
suppressWarnings(devtools::load_all("."))
wholetext <-  packageDescription("toolStability", fields = "Description")
Section<- strsplit(wholetext,"This R")
text1 <- Section[[1]][1]
text2 <- unlist(strsplit(paste0("This R",Section[[1]][2]),"\n"))
```

###### License: [GPL-3](https://www.r-project.org/Licenses/)


##### *Wang, T-C. and Chen, T-W.*


[![citation](https://img.shields.io/badge/Publication-Wang_et_al_2023-20639b)](https://link.springer.com/article/10.1007/s00122-023-04264-7)
[![citation](https://img.shields.io/badge/Publication-Wang_et_al_2025-darkred)](https://www.nature.com/articles/s41597-024-04332-7)

[![Website - pkgdown](https://img.shields.io/badge/website-githubpage-green)](https://Illustratien.github.io/toolStability/)
[![DOI](https://zenodo.org/badge/203346020.svg)](https://zenodo.org/badge/latestdoi/203346020)
[![minimal R version](https://img.shields.io/badge/R>%3D-3.5.0-6666ff.svg?logo=R)](https://cran.r-project.org/)










[![Github Code Size](https://img.shields.io/github/languages/code-size/Illustratien/toolStability.svg)](https://github.com/Illustratien/toolStability)
[![Codecov test coverage](https://codecov.io/gh/Illustratien/toolStability/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Illustratien/toolStability?branch=master)
[![R-CMD-check](https://github.com/Illustratien/toolStability/workflows/R-CMD-check/badge.svg)](https://github.com/Illustratien/toolStability/actions)








## Description


`r text1` `r "There are 11 stability indices in this package."`

`r text2[1]`
`r text2[2]`
`r text2[3]`

`r text2[4]`
`r text2[5]`
`r text2[6]`
























## Installation
The package can be installed from CRAN as follows:

```{r, eval=FALSE}
install.packages('toolStability', dependencies=TRUE)
```

The development version can be installed from github as follows:

```{r, eval=FALSE}
if (!require('devtools')) install.packages('devtools')
devtools::install_github("Illustratien/toolStability")
# or
if (!require('remotes')) install.packages('remotes')
remotes::install_github("Illustratien/toolStability")
```

## Tutorial
There are 11 stability indices in this package. A detailed tutorial with examples and references:
 [click here](https://illustratien.github.io/toolStability/articles/toolStability.html).

## What's new
To know whats new in this version type:

```{r, eval=FALSE}
news(package='toolStability')
```

## Links
[Main publication on TAAG](https://link.springer.com/article/10.1007/s00122-023-04264-7)

[Main publication analysis and visualization pipeline](https://github.com/Illustratien/Wang_2023_TAAG)

[Dataset documentation on Zenodo](https://doi.org/10.5281/zenodo.4729636)

[Package documentation on Zenodo](https://doi.org/10.5281/zenodo.5804212)

[CRAN page](https://cran.r-project.org/package=toolStability)


## Citing `toolStability`
To cite the methods in the package please use:

```{r, eval = FALSE}
Wang, TC., Casadebaig, P. & Chen, TW. More than 1000 genotypes are required to derive robust relationships between yield, yield stability and physiological parameters: a computational study on wheat crop. Theor Appl Genet 136, 34 (2023). https://doi.org/10.1007/s00122-023-04264-7
```

Owner

  • Name: Tien-Cheng
  • Login: Illustratien
  • Kind: user
  • Location: Berlin, Germany
  • Company: Humboldt Universität zu Berlin

PhD student

GitHub Events

Total
  • Release event: 1
  • Push event: 3
  • Create event: 1
Last Year
  • Release event: 1
  • Push event: 3
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 201
  • Total Committers: 6
  • Avg Commits per committer: 33.5
  • Development Distribution Score (DDS): 0.338
Past Year
  • Commits: 13
  • Committers: 3
  • Avg Commits per committer: 4.333
  • Development Distribution Score (DDS): 0.308
Top Committers
Name Email Commits
TC t****g@g****e 133
wangtien r****4@g****w 41
wangtien r****4@n****w 16
Tien-Cheng 3****n 6
GitHub Actions a****s@g****m 3
Katrin Leinweber K****r@t****u 2
Committer Domains (Top 20 + Academic)
tib.eu: 1 github.com: 1 ntu.edu.tw: 1 g.ntu.edu.tw: 1 gem.uni-hannover.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 4
  • Total pull requests: 3
  • Average time to close issues: about 1 month
  • Average time to close pull requests: about 5 hours
  • Total issue authors: 3
  • Total pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.33
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • katrinleinweber (2)
  • mverocai (1)
  • sckott (1)
Pull Request Authors
  • Illustratien (2)
  • katrinleinweber (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 602 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: toolStability

Tool for Stability Indices Calculation

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 602 Last month
  • Docker Downloads: 21,613
Rankings
Forks count: 28.8%
Downloads: 29.1%
Dependent packages count: 29.8%
Average: 31.0%
Stargazers count: 31.7%
Dependent repos count: 35.5%
Maintainers (1)
wangtien@student.hu-berlin.de
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Rdpack * imports
  • data.table * imports
  • dplyr * imports
  • nortest * imports
  • stats * imports
  • RCurl * suggests
  • XML * suggests
  • ggplot2 * suggests
  • httr * suggests
  • knitr * suggests
  • pander * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/test-coverage.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite
.github/workflows/R-CMD-check.yaml actions
.github/workflows/pkgdown.yaml actions
.github/workflows/render-readme.yaml actions