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shelltrace

shelltrace

https://github.com/nielsjdewinter/shelltrace

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary

Keywords

bivalve chemistry elements fisheries growth mollusk palaeobiology palaeoecology paleobiology paleoclimate shell
Last synced: 6 months ago · JSON representation

Repository

shelltrace

Basic Info
  • Host: GitHub
  • Owner: nielsjdewinter
  • Language: R
  • Default Branch: master
  • Size: 1.77 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
bivalve chemistry elements fisheries growth mollusk palaeobiology palaeoecology paleobiology paleoclimate shell
Created over 8 years ago · Last pushed over 8 years ago
Metadata Files
Readme

README.Rmd 

---
output:
  md_document:
    variant: markdown_github
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

# shelltrace

The goal of shelltrace is to provide the user with an open-source,
 widely accessible version of the ShellTrace model that is described
 in the Geoscientific Model Development Paper "ShellTrace v1.0 - A
 new approach for modelling growth and trace element uptake in marine
 bivalve shells: Model verification on pacific oyster shells
 (Crassostrea gigas)". The model reconstructs growth rates and the rates
 of incorporation of trace elements into the shells of bivalves. The goal
 of the model is to reconstruct uptake rates of various trace elements in
 order to shed light on the processes that influence these uptake rate and
 to enable the discussion of trace element concentrations in bivalve
 shells in relation to their environment.

## Instructions

The way this package works is slightly different from a regular R package.
 Most of the functions contained in this package are not meant to run
 individually. Instead, they form a sequence of steps that need to be followed
 for the model to work. Examples of all functions and a detailed explanation of
 their mathmatics are found in the paper which explains the model. Some functions,
 such as "Oyster_plot_cross_section" are meant to be run by itself, but all
 functions are embedded in larger functions, such as "Oyster_combined_run" that
 run all functions of the model in the right order.

# Availability

Besides being uploaded to the CRAN database, the source code of this entire
package will also be made available online as a supplement to the paper in
Geoscientific Model Development and as an entry in the open source research
data repository Zenodo (http://doi.org/10.5281/zenodo.817258).

Owner

  • Name: Niels J. de Winter
  • Login: nielsjdewinter
  • Kind: user
  • Location: Amsterdam, the Netherlands
  • Company: Vrije Universiteit Amsterdam

Assistant professor Marine Geology and Paleoclimatology

GitHub Events

Total
Last Year

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 10
  • Total Committers: 1
  • Avg Commits per committer: 10.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
nielsjdewinter n****r@l****l 10
Committer Domains (Top 20 + Academic)
live.nl: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 215 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
cran.r-project.org: shelltrace

Bivalve Growth and Trace Element Accumulation Model

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 215 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 42.5%
Downloads: 83.5%
Maintainers (1)
niels.de.winter@vub.be
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.1.0 depends
  • bmp * imports
  • grDevices * imports
  • stats * imports
  • tiff * imports
  • xlsx * imports