Science Score: 49.0%
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○Scientific vocabulary similarity
Low similarity (9.6%) to scientific vocabulary
Repository
An implement R package to visualize GSEA results
Basic Info
Statistics
- Stars: 180
- Watchers: 3
- Forks: 16
- Open Issues: 32
- Releases: 7
Metadata Files
README.md
GseaVis 
The goal of GseaVis is to visualize GSEA enrichment results as an implement package for enrichplot gseaplot2 function. And some codes origin from enrichplot package, thanks for Guangchuang Yu professor's contribution! The enrichment results from clusterProfiler and GSEA software can be supported as input for GseaVis for visualization.
You can mark your gene name on GSEA plot and this package also support more avaliable parameters to customize your own plot.
Installation
You can install the development version of GseaVis from GitHub with:
``` r
install.packages("devtools")
devtools::install_github("junjunlab/GseaVis") ```
Citation
Jun Zhang, Hongyuan Li, Wenjun Tao, Jun Zhou. GseaVis: An R Package for Enhanced Visualization of Gene Set Enrichment Analysis in Biomedicine. Med Research, 2025.
Examples
Documentation
https://junjunlab.github.io/gseavis-manual/
Related blogs
- GseaVis 优雅的可视化 GSEA 富集结果
- GseaVis 的一些新功能
- GseaVis 对 gseKEGG 结果的支持优化
- R 包 bug 修复及问题一览
- dotplotGsea 可视化 GSEA 富集结果
- GSEA 结果火山图可视化
- GseaVis 多条通路可视化
- GseaVis 为你的通路基因添加热图
- bugs 报告和修复
- 同学你又在画 GSEA?
- GseaVis 一键对接 GSEA 软件结果并可视化
- 听说你想把多个样本的 GSEA 画在一起?
- 听说你只有富集表格还想画 GSEA 图?
- GSEA 还可以环形可视化？
- 听说你想把 fgsea 结果用 GseaVis 美化？
- 桑基图加富集图一行代码出图?
- GseaVis 绘制山脊图
Owner
- Name: JunJunLao
- Login: junjunlab
- Kind: user
- Location: Nanjing
- Company: China Pharmaceutical University
- Repositories: 13
- Profile: https://github.com/junjunlab
路漫漫其修远兮 吾将上下而求索
GitHub Events
Total
- Commit comment event: 3
- Issues event: 12
- Watch event: 52
- Issue comment event: 28
- Push event: 21
- Fork event: 2
Last Year
- Commit comment event: 3
- Issues event: 12
- Watch event: 52
- Issue comment event: 28
- Push event: 21
- Fork event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 41
- Total pull requests: 1
- Average time to close issues: 7 days
- Average time to close pull requests: 21 days
- Total issue authors: 39
- Total pull request authors: 1
- Average comments per issue: 1.46
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 14
- Pull requests: 0
- Average time to close issues: about 14 hours
- Average time to close pull requests: N/A
- Issue authors: 13
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
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- winglet0996 (1)
- wbvguo (1)
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- 807953268 (1)
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Pull Request Authors
- YJGeng-Iriy (1)
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Packages
- Total packages: 1
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Total downloads:
- cran 517 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
cran.r-project.org: GseaVis
Implement for 'GSEA' Enrichment Visualization
- Homepage: https://github.com/junjunlab/GseaVis
- Documentation: http://cran.r-project.org/web/packages/GseaVis/GseaVis.pdf
- License: MIT + file LICENSE
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Latest release: 0.0.5
published about 3 years ago
Rankings
Maintainers (1)
Dependencies
- DOSE * imports
- RColorBrewer * imports
- aplot * imports
- dplyr * imports
- ggplot2 * imports
- ggrepel * imports
- grDevices * imports
- magrittr * imports
- stringr * imports
- utils * imports