survsakk

The survSAKK package creates publication ready KM summary figures with base R.

https://github.com/sakk-statistics/survsakk

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Scientific vocabulary similarity
Low similarity (15.9%) to scientific vocabulary

Last synced: 9 months ago · JSON representation

Repository

The survSAKK package creates publication ready KM summary figures with base R.

Basic Info

Host: GitHub
Owner: SAKK-Statistics
License: gpl-2.0
Language: R
Default Branch: main
Homepage: https://sakk-statistics.github.io/survSAKK/
Size: 24.1 MB

Statistics

Stars: 1
Watchers: 0
Forks: 1
Open Issues: 1
Releases: 9

Created over 2 years ago · Last pushed about 1 year ago

Metadata Files

Readme Changelog License

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  eval = FALSE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# survSAKK 

## Overview

The `survSAKK` R package provides the `surv.plot()` function, facilitating Kaplan-Meier survival analysis. Designed with user-friendliness and efficiency in mind. Offering a robust tool for analysing survival data. It utilises the functionalites of `survival::survfit()`.

## Installation

Install the current version of `survSAKK` with:

```{r installation}
# install.packages("devtools")
devtools::install_github("SAKK-Statistics/survSAKK",
                         build_vignettes = TRUE,
                         force = TRUE)
```

## Usage


```{r, eval=TRUE, warning=FALSE,fig.height = 6, fig.width = 7}
# Load required library
library(survSAKK)
library(survival)

# Fit survival object 
fit <- survfit(Surv(lung$time/365.25*12, status) ~ sex, data = lung)

# Generate surival plot
surv.plot(fit = fit, 
          time.unit = "month",
          legend.name =  c("Male", "Female"))
```


## Getting help

### Documentation

```{r echo=TRUE, eval=FALSE}
# R Documentation
## survSAKK: Create publication ready Kaplan-Meier plot
help("survSAKK-package")

## Publication Ready Kaplan-Meier Plot
help("surv.plot")
```

### Vignette

Webpage of the vignette: [survSAKK](https://sakk-statistics.github.io/survSAKK/articles/surv.plot.html)

```{r echo=TRUE, eval=FALSE}
# Vignette
vignette("surv.plot", package = "survSAKK")
```

[![pages-build-deployment](https://github.com/SAKK-Statistics/survSAKK/actions/workflows/pages/pages-build-deployment/badge.svg?branch=main)](https://github.com/SAKK-Statistics/survSAKK/actions/workflows/pages/pages-build-deployment)[![codecov](https://codecov.io/gh/SAKK-Statistics/survSAKK/branch/main/graph/badge.svg?token=7Q8ASW3OVM)](https://app.codecov.io/gh/SAKK-Statistics/survSAKK)[![CRAN status](https://www.r-pkg.org/badges/version/survSAKK)](https://CRAN.R-project.org/package=survSAKK)

Owner

Name: SAKK Statistics
Login: SAKK-Statistics
Kind: organization

Repositories: 1
Profile: https://github.com/SAKK-Statistics

GitHub Events

Total

Create event: 4
Release event: 1
Issues event: 4
Delete event: 3
Member event: 2
Issue comment event: 7
Push event: 7
Pull request event: 9

Last Year

Create event: 4
Release event: 1
Issues event: 4
Delete event: 3
Member event: 2
Issue comment event: 7
Push event: 7
Pull request event: 9

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 2
Total pull requests: 4
Average time to close issues: 4 months
Average time to close pull requests: about 1 month
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 1.0
Average comments per pull request: 0.75
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 2
Pull requests: 4
Average time to close issues: 4 months
Average time to close pull requests: about 1 month
Issue authors: 2
Pull request authors: 2
Average comments per issue: 1.0
Average comments per pull request: 0.75
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

stefaniehayoz (3)
vsomas (1)
KatrinGyselSAKK (1)

Pull Request Authors

KatrinGyselSAKK (5)
SAKK-vsomas (5)
stefaniehayoz (1)

Top Labels

Issue Labels

enhancement (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 415 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 2
Total maintainers: 1

cran.r-project.org: survSAKK

Create Publication Ready Kaplan-Meier Plots

Homepage: https://sakk-statistics.github.io/survSAKK/
Documentation: http://cran.r-project.org/web/packages/survSAKK/survSAKK.pdf
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Latest release: 1.3.2
published about 1 year ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 415 Last month

Rankings

Dependent packages count: 28.2%

Dependent repos count: 34.8%

Average: 49.9%

Downloads: 86.7%

Maintainers (1)

Charlotte.Micheloud@sakk.ch