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codified

Produce standard/formalized demographics tables

https://github.com/ouhscbbmc/codified

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.9%) to scientific vocabulary

Keywords

r r-package reproducible-research
Last synced: 11 months ago · JSON representation

Repository

Produce standard/formalized demographics tables

Basic Info
Statistics
  • Stars: 3
  • Watchers: 5
  • Forks: 0
  • Open Issues: 3
  • Releases: 2
Topics
r r-package reproducible-research
Created almost 8 years ago · Last pushed 12 months ago
Metadata Files
Readme Changelog License Code of conduct

README.md

codified

Produce standard/formalized demographics tables

Clinical researchers often need to document and report the demographics of all consented subjects. A common use case is for reporting to funding agencies, including the National Institutes of Health (NIH). The NIH requires a particular format for the PHS Inclusion Enrollment Report in each annual Research Performance Progress Report (RPPR).

The codified package, in combination with the REDCapR package, provides a pipeline to directly extract the demographics of consented subjects from a REDCap database, and to rapidly and reproducibly produce standard demographics tables. This pipeline is demonstrated in the vignette, NIH Enrollment Tables in HTML.

Installation and Documentation

The development version can be installed from GitHub after installing the remotes package.

r install.packages("remotes") # Run this line if the 'remotes' package isn't installed already. remotes::install_github(repo = "OuhscBbmc/codified")

The release version can be installed from CRAN.

r install.packages("codified")

The package can be uninstalled from your local machine with remove.packages("codified").

Build Status and Package Characteristics

| GitHub | GitHub Actions | Coveralls | | :----- | :---------------------------: | :-------: | | Main | R-CMD-check | Coverage Status | | Dev | R-CMD-check | Coverage Status | | | Ubuntu LTS | Windows Server | Test Coverage |

| Key | Value | | :--- | :----- | | License | License: MIT | | Development Doc | Rdoc | | Zenodo Archive | DOI | | CRAN Version | CRAN_Status_Badge | | CRAN Rate | CRANPace | | Production Doc | Rdoc |

Owner

  • Name: OUHSC BBMC
  • Login: OuhscBbmc
  • Kind: organization
  • Email: wibeasley@hotmail.com
  • Location: Oklahoma City

Biomedical and Behavioral Methodology Core (University of Oklahoma Health Sciences Center)

GitHub Events

Total
  • Delete event: 1
  • Create event: 1
Last Year
  • Delete event: 1
  • Create event: 1

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 89
  • Total Committers: 3
  • Avg Commits per committer: 29.667
  • Development Distribution Score (DDS): 0.135
Top Committers
Name Email Commits
Will Beasley w****y@h****m 77
Peter Higgins h****5@u****m 9
dependabot[bot] 4****]@u****m 3

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 9
  • Total pull requests: 8
  • Average time to close issues: 4 days
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.11
  • Average comments per pull request: 0.75
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 5
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • wibeasley (9)
Pull Request Authors
  • dependabot[bot] (6)
  • wibeasley (3)
Top Labels
Issue Labels
Pull Request Labels
dependencies (6)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 264 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 3
  • Total versions: 2
  • Total maintainers: 1
cran.r-project.org: codified

Produce Standard/Formalized Demographics Tables

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 3
  • Downloads: 264 Last month
Rankings
Dependent repos count: 16.5%
Stargazers count: 25.5%
Forks count: 27.8%
Average: 28.1%
Dependent packages count: 28.8%
Downloads: 42.1%
Maintainers (1)
wibeasley@hotmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • checkmate >= 1.8.4 imports
  • dplyr >= 1.0.0 imports
  • kableExtra * imports
  • knitr >= 1.18.0 imports
  • rlang * imports
  • tibble >= 1.4.0 imports
  • tidyr >= 1.0.0 imports
  • REDCapR * suggests
  • covr * suggests
  • readr >= 1.1.0 suggests
  • rmarkdown * suggests
  • testthat >= 3.0 suggests
.github/workflows/check-release.yml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yml actions
  • actions/cache v4 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite