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nzffdr

Import, clean and update data from the New Zealand Freshwater Fish Database

https://github.com/flee598/nzffdr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.0%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Import, clean and update data from the New Zealand Freshwater Fish Database

Basic Info
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 2
  • Open Issues: 0
  • Releases: 2
Created over 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---

```{r, include = FALSE}
knitr::opts_chunk$set(
  dpi = 600,
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  warning = FALSE,
  message = FALSE 
)
```

# nzffdr 



[![CRAN status](https://www.r-pkg.org/badges/version/nzffdr)](https://CRAN.R-project.org/package=nzffdr)
[![R-CMD-check](https://github.com/flee598/nzffdr/workflows/R-CMD-check/badge.svg)](https://github.com/flee598/nzffdr/actions)
  [![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/nzffdr)](https://r-pkg.org/pkg/nzffdr)
[![R-CMD-check](https://github.com/flee598/nzffdr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/flee598/nzffdr/actions/workflows/R-CMD-check.yaml)



## Package overview

The purpose of this package is to allow for direct access to the NZ Freshwater Fish Database ([NZFFD](https://nzffdms.niwa.co.nz/search)) from R and additional functions for cleaning imported data and adding missing data. 

For a detailed guide to using the package see the [help page](https://flee598.github.io/nzffdr/).

A preprint describing the package is now available (if you wish to cite the package please use this):

Lee, F., & Young, N. (2021). nzffdr: an R package to import, clean and update data from the New Zealand Freshwater Fish Database. bioRxiv. https://doi.org/10.1101/2021.06.22.449519

### Installation
```{r, warning = FALSE, eval = FALSE}
install.packages("nzffdr")
```


### Development version
To install the latest development version install from GitHub.
```{r, warning = FALSE, eval = FALSE}
devtools::install_github("flee598/nzffdr")
```

### Import data from the NZFFD 

This function requires an internet connection to query the NZFFD database. 

```{r}
# import all records 
library(nzffdr)

dat <- nzffdr_import(download_format = "essential")
head(dat)

# To import the entire NZFF Database:
# dat <- nzffd_import()
```

Owner

  • Login: flee598
  • Kind: user

Quantitative Freshwater Ecologist

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 4
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 7
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 4
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 7
  • Pull request event: 2
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 95
  • Total Committers: 4
  • Avg Commits per committer: 23.75
  • Development Distribution Score (DDS): 0.095
Past Year
  • Commits: 16
  • Committers: 2
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.063
Top Committers
Name Email Commits
Finnbar Lee l****r@g****m 86
flee598 5****8 7
Finnbar Lee f****8@U****z 1
#flee59 f****e@c****z 1
Committer Domains (Top 20 + Academic)
cawthron.org.nz: 1 uoa.auckland.ac.nz: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 8
  • Total pull requests: 5
  • Average time to close issues: almost 2 years
  • Average time to close pull requests: 2 days
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 0.13
  • Average comments per pull request: 0.2
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: 9 days
  • Average time to close pull requests: 9 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • flee598 (7)
  • csim063 (1)
Pull Request Authors
  • flee598 (4)
  • csim063 (2)
Top Labels
Issue Labels
enhancement (3) documentation (1) bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 232 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
cran.r-project.org: nzffdr

Import, Clean and Update Data from the New Zealand Freshwater Fish Database

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 232 Last month
Rankings
Forks count: 21.9%
Stargazers count: 28.5%
Dependent packages count: 29.8%
Average: 34.7%
Dependent repos count: 35.5%
Downloads: 57.8%
Maintainers (1)
lee.finnbar@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • curl * imports
  • httr * imports
  • stringi * imports
  • utils * imports
  • xml2 * imports
  • devtools * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • roxygen2 * suggests