tci
R package to calculate the Total Cophenetic Index of Mir et al. 2013
Science Score: 20.0%
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Low similarity (7.4%) to scientific vocabulary
Repository
R package to calculate the Total Cophenetic Index of Mir et al. 2013
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Metadata Files
README.md
TotalCopheneticIndex
R package implementing the Total Cophenetic Index measure of Mir et al. (2013).
This package is now simply a wrapper for the function TotalCopheneticIndex()
in the package 'TreeTools'.
The total cophenetic index describes how balanced a phylogenetic tree is, by measuring the how deep the most recent common ancestor of each pair of leaves lies within the tree.
See also
This functionality is now available via the function TotalCopheneticIndex() in the
'TreeTools' package, and via Rotger's
(unmaintained?) package
'CollessLike'.
References
A. Mir, F. Rossello, L. A. Rotger, A new balance index for phylogenetic trees. Math. Biosci. 241, 125-136 (2013).
Owner
- Name: Martin R. Smith
- Login: ms609
- Kind: user
- Location: Durham, UK
- Company: Department of Earth Sciences, Durham University
- Website: https://orcid.org/0000-0001-5660-1727
- Twitter: PalaeoSmith
- Repositories: 21
- Profile: https://github.com/ms609
Palaeontology & phylogenetics
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| Name | Commits | |
|---|---|---|
| Martin R. Smith | m****s@g****m | 56 |
| Martin R. Smith | m****h@d****k | 1 |
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cran.r-project.org: TotalCopheneticIndex
Quantify the Balance of Phylogenetic Trees
- Homepage: https://github.com/ms609/tci/
- Documentation: http://cran.r-project.org/web/packages/TotalCopheneticIndex/TotalCopheneticIndex.pdf
- License: Unlimited
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Latest release: 2.0.1
published about 5 years ago
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Maintainers (1)
Dependencies
- R >= 3.4.0 depends
- TreeTools >= 1.4.5 imports
- ape * suggests
- testthat * suggests