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afttest

R package afttest: Goodness-of-fit test for semi-parametric Accelerated Failure Time (AFT) models

https://github.com/woojungbae/afttest

Science Score: 39.0%

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Last synced: 10 months ago · JSON representation

Repository

R package afttest: Goodness-of-fit test for semi-parametric Accelerated Failure Time (AFT) models

Basic Info
  • Host: GitHub
  • Owner: WoojungBae
  • License: gpl-3.0
  • Language: C++
  • Default Branch: master
  • Homepage:
  • Size: 52.1 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created over 7 years ago · Last pushed 10 months ago
Metadata Files
Readme License

README.Rmd 

---
title: afttest: Model Diagnostics for AFT Models
output: github_document
---

[![CRAN_Status_Badge][r-pkg-badge]][cran-url]
[![Total_Downloads][cranlog-total]][cran-url]
[![Downloads from the RStudio CRAN mirror][cranlog-badge]][cran-url]
[![Build Status][gha-icon]][gha-url]

The R package **afttest** is intended to be a user-friendly *supplementary*
package to the base package **aftgee**.

## Features
In addition to the R interface, **afttest** provides a C++ header-only library 
integrated with **Rcpp**, which allows the construction of spline basis 
functions directly in C++ with the help of **Rcpp** and **RcppArmadillo**. 
Thus, it can also be treated as one of the **Rcpp\** packages. 

## Installation of CRAN Version
You can install the released version from
[CRAN](https://CRAN.R-project.org/package=afttest).

``` r
install.packages("afttest")
```

## Development
The latest version of the package is under development at
[GitHub](https://github.com/WoojungBae/afttest). If it is able to pass
the automated package checks, one may install it by

``` r
if (!require(devtools)) install.packages("devtools")
devtools::install_github("WoojungBae/afttest")
```

## Performance
The implementation of the main functions has been written in C++ with the 
help of the **Rcpp** and **RcppArmadillo** packages. The computational 
performance has thus been boosted.

## Reference 
Bae, W., Choi, D., Yan, J., Kang, S. (2025). afttest: model diagnostics for 
semiparametric accelerated failure time models in R. *arXiv*, 
**will be updated soon**.

Choi, D., Bae, W., Yan, J., and Kang, S. (2024). A general model-checking 
procedure for semiparametric accelerated failure time models. 
*Statistics and Computing*, **34**(3) 117

Bae, W., Choi, D., Yan, J., Kang, S. (2022). afttest: Model Diagnostics for 
Accelerated Failure Time Models. *CRAN*, **https://CRAN.R-project.org/package=afttest**.

Chiou, S., Kang, S., and Yan, J. (2014).  Fitting accelerated failure time model 
in routine survival analysis with R package aftgee. 
*Journal of Statistical Software*, **61**(11): 1--23. 

[r-pkg-badge]: https://www.r-pkg.org/badges/version/afttest
[cranlog-badge]: https://cranlogs.r-pkg.org/badges/afttest
[cranlog-total]: https://cranlogs.r-pkg.org/badges/grand-total/afttest
[cran-url]: https://CRAN.R-project.org/package=afttest
[gha-icon]: https://github.com/WoojungBae/afttest/workflows/R-CMD-check/badge.svg
[gha-url]: https://github.com/WoojungBae/afttest/actions
[github-url]: https://github.com/WoojungBae/afttest
[example-pkg]: https://github.com/WoojungBae/example-pkg-Rcpp-afttest
[arXiv-badge]: https://img.shields.io/badge/arXiv-<10.48550/arXiv.2305.11445>-.svg
[gpl]: https://www.gnu.org/licenses/

Owner

  • Name: Woojung
  • Login: WooJungBae
  • Kind: user

GitHub Events

Total
  • Issues event: 1
  • Watch event: 2
  • Push event: 9
Last Year
  • Issues event: 1
  • Watch event: 2
  • Push event: 9

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 2
  • Total pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • ding-ma1 (1)
  • positive-measure (1)
Pull Request Authors
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Packages

  • Total packages: 1
  • Total downloads:
    • cran 331 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 8
  • Total maintainers: 1
cran.r-project.org: afttest

Model Diagnostics for Accelerated Failure Time Models

  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 331 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 36.4%
Downloads: 52.8%
Maintainers (1)
matt.woojung@gmail.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.4.0 depends
  • Rcpp * imports
  • aftgee * imports
  • ggplot2 * imports
  • gridExtra * imports
  • survival * imports