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platetools

An R package for plotting microtitre plates

https://github.com/swarchal/platetools

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 7 committers (57.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.6%) to scientific vocabulary

Keywords

biology ggplot2 lab r
Last synced: 6 months ago · JSON representation

Repository

An R package for plotting microtitre plates

Basic Info
  • Host: GitHub
  • Owner: Swarchal
  • License: other
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 1.63 MB
Statistics
  • Stars: 55
  • Watchers: 7
  • Forks: 15
  • Open Issues: 16
  • Releases: 6
Topics
biology ggplot2 lab r
Created over 9 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog License

README.md

platetools

Build Status cran-version conda-download Codecov branch Downloads

An R package for working with multi-well plates

Installation

CRAN: r install.packages("platetools")

conda: bash conda install -c conda-forge r-platetools

GitHub (dev version): r remotes::install_github("swarchal/platetools")

Use

```r

example dataframe

df <- data.frame(vals = rnorm(384), well = numtowell(1:384, plate = 384))

rawmap(data = df$vals, well = df$well, plate = 384) + ggtitle("Example 384-well plate") + themedark() + scalefillviridis()

```

See the vignette for more examples.

Grammar
Prefix:
  • raw: raw values
  • hit: hit detection based on standard deviations
  • z: z-scored values
  • b: b-scored values
  • bhit: b-score values before hit detection
Suffix:
  • map: single plate map
  • grid: multple plate maps

e.g:
z_map: z-scored plate map
raw_grid: raw values, multiple plate maps
bhit_grid: b-scored values, coloured by hits, multiple plates

Maintainer

Scott Warchal -

Owner

  • Name: Scott Warchal
  • Login: Swarchal
  • Kind: user
  • Location: London, UK
  • Company: @FrancisCrickInstitute

High {throughput, content} screening

GitHub Events

Total
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2
Last Year
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 111
  • Total Committers: 7
  • Avg Commits per committer: 15.857
  • Development Distribution Score (DDS): 0.514
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Scott Warchal s****l@s****k 54
Scott Warchal S****l@s****k 30
Scott Warchal s****l@g****m 23
Aaron McKenna a****k@u****u 1
Charles Plessy p****y@r****p 1
Swarchal S****l@s****k 1
Kyle M. Kovary k****y@p****m 1
Committer Domains (Top 20 + Academic)
sms.ed.ac.uk: 3 riken.jp: 1 uw.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 31
  • Total pull requests: 6
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 11 days
  • Total issue authors: 14
  • Total pull request authors: 5
  • Average comments per issue: 1.03
  • Average comments per pull request: 1.33
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • Swarchal (18)
  • dumont-s (1)
  • konradbuessow (1)
  • matushiq (1)
  • NiklasTR (1)
  • imkidd57 (1)
  • fdchevalier (1)
  • shntnu (1)
  • aaronsaunders (1)
  • RobertSellers (1)
  • hadley (1)
  • HColeWarren (1)
  • zionlion77 (1)
  • gwaybio (1)
Pull Request Authors
  • teunbrand (2)
  • Swarchal (2)
  • aaronmck (1)
  • charles-plessy (1)
  • kkovary (1)
Top Labels
Issue Labels
enhancement (9) bug (8)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 364 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 2
    (may contain duplicates)
  • Total versions: 11
  • Total maintainers: 1
cran.r-project.org: platetools

Tools and Plots for Multi-Well Plates

  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 364 Last month
Rankings
Forks count: 5.2%
Stargazers count: 6.6%
Dependent repos count: 19.1%
Average: 20.5%
Dependent packages count: 28.6%
Downloads: 42.8%
Maintainers (1)
scott.warchal@gmail.com
Last synced: 6 months ago
conda-forge.org: r-platetools
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Stargazers count: 37.1%
Forks count: 37.3%
Average: 39.9%
Dependent packages count: 51.2%
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.1.0 depends
  • RColorBrewer * imports
  • ggplot2 >= 2.2.0 imports
  • testthat * suggests
  • viridis * suggests