Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 3 committers (66.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (18.4%) to scientific vocabulary
Keywords
geobiology
geochemistry
isotopes
nanosims
r
Last synced: 9 months ago
·
JSON representation
Repository
Import and process Look@NanoSIMS data in R
Basic Info
- Host: GitHub
- Owner: KopfLab
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://lans2r.kopflab.org
- Size: 10.8 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 1
- Releases: 0
Topics
geobiology
geochemistry
isotopes
nanosims
r
Created almost 12 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# lans2r
[](https://cran.r-project.org/package=lans2r)
[](https://travis-ci.org/KopfLab/lans2r)
[](https://ci.appveyor.com/project/KopfLab/lans2r)
[](https://codecov.io/github/KopfLab/lans2r?branch=master)
[](https://lans2r.kopflab.org/reference/)
## Overview
The Look@NanoSIMS (short LANS) Matlab module written by Lubos Polerecky (*Polerecky L., Adam B., Milucka J., Musat N., Vagner T. and Kuypers M. M. M. (2012) Look@NanoSIMS - a tool for the analysis of nanoSIMS data in environmental microbiology. Environmental Microbiology 14, 1009–1023.*) makes it easy to process NanoSIMS data and draw regions of interest (ROIs). The **lans2r** package provides a convenient interface to import ion maps and ROI data generated by LANS for processing and plotting in R/RMarkdown. Additionally, it can process NanoSIMS tuning (HMR) files.
## Installation
```{r, eval=FALSE}
# Install the latest release of this package from CRAN
install.packages("lans2r")
# Or the the development version directly from GitHub using devtools:
# install.packages("devtools")
devtools::install_github('KopfLab/lans2r')
```
## Usage
Once installed, load the package with:
```{r}
library(lans2r)
```
A concise overview demonstrating the functionality of the **lans2r** package is provided in the [main vignette](https://lans2r.kopflab.org/articles/lans2r.html) for the package, which can also be accessed from within R by calling `vignette("lans2r")`. Additional vignettes provide details on extended functionality and can be accessed easily by browsing the package vignettes from within R calling `browseVignettes("lans2r")`. For details on individual functions, please consult the package help (e.g. `?load_LANS_summary`).
## Example
```{r ion_maps_example, fig.width = 7, fig.height = 7.5, message = FALSE}
library(dplyr) # use of %>% and filter
library(lans2r) # the lans2r package
# load two of the data sets supplied with lans2r
load_LANS_maps (
analysis = c("analysis1", "analysis2"),
base_dir = system.file("extdata", "nanosims_data", package = "lans2r")
) %>%
# focus on the NC ions
filter(variable %in% c("14N12C", "15N12C")) %>%
# plot the ion maps normalized by ion counts for each ion
plot_maps(normalize = TRUE, draw_ROIs = FALSE)
```
Owner
- Name: Kopf Lab at the University of Colorado Boulder
- Login: KopfLab
- Kind: organization
- Email: kopflab@gmail.com
- Location: Boulder, CO, USA
- Website: http://www.kopflab.com/
- Repositories: 42
- Profile: https://github.com/KopfLab
GitHub Events
Total
Last Year
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 110
- Total Committers: 3
- Avg Commits per committer: 36.667
- Development Distribution Score (DDS): 0.245
Top Committers
| Name | Commits | |
|---|---|---|
| Sebastian Kopf | s****f@g****m | 83 |
| Sebastian Kopf | s****f@c****u | 25 |
| Sebastian Kopf | s****f@c****u | 2 |
Committer Domains (Top 20 + Academic)
caltech.edu: 1
colorado.edu: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 2
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- sebkopf (4)
- DavisVaughan (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 251 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
cran.r-project.org: lans2r
Work with Look at NanoSIMS Data in R
- Homepage: https://github.com/KopfLab/lans2r
- Documentation: http://cran.r-project.org/web/packages/lans2r/lans2r.pdf
- License: GPL-3 | file LICENSE
-
Latest release: 1.2.0
published over 3 years ago
Rankings
Forks count: 21.9%
Dependent packages count: 29.8%
Average: 31.4%
Downloads: 34.6%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.1 depends
- R.matlab * imports
- dplyr * imports
- ggplot2 * imports
- reshape2 * imports
- rlang * imports
- tidyr * imports
- covr * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests