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ecospace

R Package for Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks

https://github.com/pnovack-gottshall/ecospace

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    codemeta.json file
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    .zenodo.json file
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    DOI references
  • ✓
    Academic publication links
    Links to: researchgate.net
  • ✓
    Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (12.5%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

R Package for Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks

Basic Info
  • Host: GitHub
  • Owner: pnovack-gottshall
  • Language: R
  • Default Branch: master
  • Size: 2.92 MB
Statistics
  • Stars: 5
  • Watchers: 3
  • Forks: 2
  • Open Issues: 2
  • Releases: 0
Created almost 11 years ago · Last pushed about 6 years ago
Metadata Files
Readme

README.md

ecospace: R Package for Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks

ecospace is an R package that implements stochastic simulations of community assembly (ecological diversification) using customizable ecospace frameworks (functional trait spaces). Simulations model the 'neutral', 'redundancy', 'partitioning', and 'expansion' models of Bush and Novack-Gottshall (2012) and Novack-Gottshall (2016a, b). The package provides a wrapper to calculate common ecological disparity and functional ecology statistical dynamics as a function of species richness. Functions are written so they will work in a parallel-computing environment.

The package also contains a sample data set, functional traits for Late Ordovician (Type Cincinnatian) fossil species from the Kope and Waynesville formations.

The most recent public release of the code is on CRAN at:

http://cran.r-project.org/web/packages/ecospace

You can install the most recent public release version in R using:

install.packages("ecospace")

The latest pre-release version can be found at GitHub:

https://github.com/pnovack-gottshall/ecospace

Or downloaded directly in R using:

library(devtools)
devtools::install_github("pnovack-gottshall/ecospace")
library(ecospace)

References

Novack-Gottshall, P.M. 2016a. General models of ecological diversification. I. Conceptual synthesis. Paleobiology 42: 185-208.

Novack-Gottshall, P.M. 2016b. General models of ecological diversification. II. Simulations and empirical applications. Paleobiology 42: 209-239.

Bush, A. and P.M. Novack-Gottshall. 2012. Modelling the ecological-functional diversification of marine Metazoa on geological time scales. Biology Letters 8: 151-155.

Reprints are available at https://www.researchgate.net/profile/Philip_Novack-Gottshall/contributions.

The most recent commit is currently: Travis-CI Build Status (Travis CI)

This package is authored by Phil Novack-Gottshall (pnovack-gottshall@ben.edu) and offered under CC0.

The current total number of downloads of the ecospace package from the RStudio CRAN mirror is: Number of Downloads

Owner

  • Name: Phil Novack-Gottshall
  • Login: pnovack-gottshall
  • Kind: user
  • Location: Lisle, IL
  • Company: Benedictine University

Functional ecology and paleobiology

GitHub Events

Total
  • Watch event: 1
Last Year
  • Watch event: 1

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 94
  • Total Committers: 1
  • Avg Commits per committer: 94.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
pnovack-gottshall p****l@b****u 94
Committer Domains (Top 20 + Academic)
ben.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 7
  • Total pull requests: 0
  • Average time to close issues: over 1 year
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • pnovack-gottshall (6)
  • edgar-zigis (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 361 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: ecospace

Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 361 Last month
Rankings
Forks count: 17.8%
Stargazers count: 24.2%
Average: 29.4%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Downloads: 40.0%
Maintainers (1)
pnovack-gottshall@ben.edu
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • FD >= 1.0 imports
  • data.table * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • vegan * suggests