meconetcomp
Compare microbial co-occurrence networks based on the trans_network class of microeco package
Science Score: 39.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.4%) to scientific vocabulary
Repository
Compare microbial co-occurrence networks based on the trans_network class of microeco package
Basic Info
- Host: GitHub
- Owner: ChiLiubio
- License: gpl-3.0
- Language: R
- Default Branch: main
- Size: 4.03 MB
Statistics
- Stars: 10
- Watchers: 2
- Forks: 0
- Open Issues: 9
- Releases: 8
Metadata Files
README.md
meconetcomp 
Compare microbial co-occurrence networks based on the microeco package
Install meconetcomp
Install meconetcomp package from CRAN directly.
r
install.packages("meconetcomp")
Or install the latest development version from github.
```r
If devtools package is not installed, first install it
install.packages("devtools") devtools::install_github("ChiLiubio/meconetcomp") ```
Tutorial
https://chiliubio.github.io/microeco_tutorial/meconetcomp-package.html
Citation
Chi Liu, Chaonan Li, Yanqiong Jiang, Raymond Jianxiong Zeng, Minjie Yao, and Xiangzhen Li. 2023. "A guide for comparing microbial co-occurrence networks." iMeta. 2(1): e71. https://doi.org/10.1002/imt2.71
Contributing
We welcome any contribution ! Any idea/suggestion will be considered. By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.
Owner
- Name: Chi Liu
- Login: ChiLiubio
- Kind: user
- Location: Fujian Agriculture and Forestry University
- Repositories: 5
- Profile: https://github.com/ChiLiubio
R microbiology ecology
GitHub Events
Total
- Create event: 1
- Release event: 1
- Issues event: 1
- Watch event: 3
- Issue comment event: 3
- Push event: 8
Last Year
- Create event: 1
- Release event: 1
- Issues event: 1
- Watch event: 3
- Issue comment event: 3
- Push event: 8
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 11
- Total pull requests: 0
- Average time to close issues: 3 days
- Average time to close pull requests: N/A
- Total issue authors: 8
- Total pull request authors: 0
- Average comments per issue: 2.73
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: 5 days
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 4.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- GuillaumeSwB (2)
- Madi784 (2)
- RubyDeerLu (1)
- lizhaojie1025 (1)
- Ananya1006 (1)
- Shawane-Wang (1)
- finally-jay (1)
- dengyx98 (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 418 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 9
- Total maintainers: 1
cran.r-project.org: meconetcomp
Compare Microbial Networks of 'trans_network' Class of 'microeco' Package
- Homepage: https://github.com/ChiLiubio/meconetcomp
- Documentation: http://cran.r-project.org/web/packages/meconetcomp/meconetcomp.pdf
- License: GPL-3
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Latest release: 0.6.1
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.5.0 depends
- dplyr * imports
- igraph * imports
- magrittr * imports
- microeco * imports
- reshape2 * imports
- ape * suggests
- file2meco * suggests
- rgexf * suggests