paice
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. 2022 (doi:10.1111/jbi.14341).
Science Score: 23.0%
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: wiley.com -
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○Scientific vocabulary similarity
Low similarity (8.6%) to scientific vocabulary
Keywords
Repository
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. 2022 (doi:10.1111/jbi.14341).
Basic Info
- Host: GitHub
- Owner: PAICEcode
- Language: R
- Default Branch: main
- Homepage: https://cran.r-project.org/package=PAICE
- Size: 4.02 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 2
Topics
Metadata Files
README.md
PAICE
PAICE (Phylogeographic Analysis of Island Colonization Events) is a haplotype-based method implemented into an R package to estimate the number of inter-island colonization events between the islands of an archipelago. Although designed for oceanic archipelagos, it works in any island-like system (e.g., sky islands). For further information, check our publication in Journal of Biogeography (Coello et al. 2022).
A complete guide can be found on our Wiki.
Owner
- Login: PAICEcode
- Kind: user
- Repositories: 1
- Profile: https://github.com/PAICEcode
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| albertojcoello | a****o@g****m | 5 |
| Alberto J. Coello | 4****o | 3 |
| Alberto J. Coello | 4****o | 2 |
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 0
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- albertojcoello (1)
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Packages
- Total packages: 1
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Total downloads:
- cran 466 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
cran.r-project.org: PAICE
Phylogeographic Analysis of Island Colonization Events
- Homepage: <https://github.com/PAICEcode/PAICE>
- Documentation: http://cran.r-project.org/web/packages/PAICE/PAICE.pdf
- License: GPL-2
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Latest release: 1.0.2
published about 2 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.6.0 depends
- spelling * suggests
- testthat * suggests
- R >= 3.6.0 depends
- testthat * suggests
- R >= 3.6.0 depends
- testthat * suggests