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pheindicatormethods

https://github.com/ukhsa-collaboration/pheindicatormethods

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: ukhsa-collaboration
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Size: 8.84 MB
Statistics
  • Stars: 27
  • Watchers: 1
  • Forks: 15
  • Open Issues: 13
  • Releases: 12
Created over 7 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

[![test-coverage](https://github.com/ukhsa-collaboration/PHEindicatormethods/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/ukhsa-collaboration/PHEindicatormethods/actions/workflows/test-coverage.yaml)
[![R-CMD-check](https://github.com/ukhsa-collaboration/PHEindicatormethods/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ukhsa-collaboration/PHEindicatormethods/actions/workflows/R-CMD-check.yaml)


# PHEindicatormethods

This is an R package to support analysts in the execution of statistical methods approved for use in the production of PHE indicators such as those presented via [Fingertips](https://fingertips.phe.org.uk/).  It provides functions for the generation of Proportions, Rates, DSRs, ISRs, Means, Life Expectancy and Slope Index of Inequality including confidence intervals for these statistics, and a function for assigning data to quantiles.  

In October 2021 Public Health England (PHE) was disbanded and as a result this package is now owned by the Department of Health and Social Care.  It will continue to be supported and to prevent breaking changes there are currently no immediate plans to rename the package or its functions in light of this organisational change.

Any feedback would be appreciated and can be provided using the Issues section of the [PHEindicatormethods GitHub repository](https://github.com/ukhsa-collaboration/PHEindicatormethods).






## Installation


#### Install from CRAN

Install the latest release version of PHEindicatormethods directly from CRAN with:

``` {r install from CRAN, eval=FALSE}
install.packages("PHEindicatormethods")
```






#### Install a development version from GitHub using remotes package

You can install a development version of PHEindicatormethods from GitHub with:

``` {r devtools-installation, eval=FALSE}
if (!require(remotes)) install.packages("remotes")

remotes::install_github("ukhsa-collaboration/PHEindicatormethods",
                         build_vignettes = TRUE,
                         dependencies = TRUE,
                         build_opts = c("--no-resave-data"))
```









## Package Versioning
Following installation of this package, type 'packageVersion("PHEindicatormethods")' in the R console to show the package version.  If it is suffixed with a 9000 number then you are using an unapproved development version.

Released versions of this package will have version numbers consisting of three parts:  

major.minor.patch  

In-development versions of this package will have a fourth component, the development version number, which will increment from 9000.

See https://r-pkgs.org/lifecycle.html for further information on package versioning

Owner

  • Name: ukhsa-collaboration
  • Login: ukhsa-collaboration
  • Kind: organization

GitHub Events

Total
  • Watch event: 1
  • Delete event: 3
  • Member event: 3
  • Push event: 45
  • Pull request event: 1
  • Create event: 1
Last Year
  • Watch event: 1
  • Delete event: 3
  • Member event: 3
  • Push event: 45
  • Pull request event: 1
  • Create event: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 44
  • Total pull requests: 47
  • Average time to close issues: 8 months
  • Average time to close pull requests: 25 days
  • Total issue authors: 13
  • Total pull request authors: 11
  • Average comments per issue: 0.89
  • Average comments per pull request: 0.87
  • Merged pull requests: 44
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: about 23 hours
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • PHEgeorginaanderson (24)
  • sebastian-fox (6)
  • Olivia-Box-Power (3)
  • PHEleighdowd (2)
  • DavidNphe (1)
  • remlapmot (1)
  • SteveSpreadborough (1)
  • ghost (1)
  • andrewbillett (1)
  • covid19ec (1)
  • emmaclegg (1)
  • QiangWanglxb (1)
  • hiralmehta89 (1)
Pull Request Authors
  • PHEgeorginaanderson (28)
  • sebastian-fox (9)
  • emmaclegg (3)
  • GeorgieAnderson (2)
  • philowhitmarsh (1)
  • matthew-francis (1)
  • hadley (1)
  • DavisVaughan (1)
  • stephenashton-dhsc (1)
  • charlottefellows (1)
  • ghost (1)
Top Labels
Issue Labels
enhancement (28) in progress (11) bug (4) Developer Wanted (2) help wanted (1) wontfix (1)
Pull Request Labels
enhancement (2)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 474 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 15
  • Total maintainers: 1
cran.r-project.org: PHEindicatormethods

Common Public Health Statistics and their Confidence Intervals

  • Versions: 15
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 474 Last month
Rankings
Forks count: 4.8%
Stargazers count: 11.8%
Average: 18.5%
Downloads: 23.6%
Dependent repos count: 23.8%
Dependent packages count: 28.7%
Maintainers (1)
georgina.anderson@dhsc.gov.uk
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.1.0 depends
  • broom * imports
  • dplyr >= 1.0.0 imports
  • lifecycle >= 1.0.0 imports
  • purrr * imports
  • rlang >= 0.4.0 imports
  • stats * imports
  • tibble * imports
  • tidyr * imports
  • knitr * suggests
  • readxl * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • withr * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite