Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.0%) to scientific vocabulary
Keywords
Repository
Protein Binding Models
Basic Info
Statistics
- Stars: 3
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
PBM - Protein Binding Models
The goal of PBM is to make analysing Biolayer Interferometry (BLI) or Surface Plasmon Resonance (SPR) data more open. After initial binding parameters are known, binding curves can be simulated and parameters such as: analyte concentration, time of association, dissociation etc. can be varied. The models within this package may also be used to fit a curve to measured binding data using a non-linear regression.
Currently, two binding models are included with this package:
- 1:1 binding
- 2:1 heterogeneous binding.
Note: more binding models are on their way.. bivalent model, mass-transport params etc.
Installation
Install the released version of usethis from CRAN:
r
install.packages("pbm")
Or install the development version from GitHub with:
r
install.packages("devtools")
devtools::install_github("jonathanrd/pbm")
Usage
For usage information and examples, see the vignette and reference manual on CRAN: pbm.
Owner
- Name: Jonathan Davies
- Login: jonathanrd
- Kind: user
- Location: Munich
- Repositories: 2
- Profile: https://github.com/jonathanrd
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jonathan Davies | j****d@g****m | 22 |
| Jonathan Davies | j****9@u****k | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
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Top Labels
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Packages
- Total packages: 1
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Total downloads:
- cran 246 last-month
- Total docker downloads: 21,613
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
cran.r-project.org: pbm
Protein Binding Models
- Homepage: https://github.com/jonathanrd/pbm
- Documentation: http://cran.r-project.org/web/packages/pbm/pbm.pdf
- License: MIT + file LICENSE
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Latest release: 1.2.1
published over 5 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.4.4 depends
- ggplot2 * suggests
- gridExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests