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clustercons

Merged consensus clustering to assess and improve class discovery with microarray data

https://github.com/biomedicalinformaticsgroup/clustercons

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
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    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
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    Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary

Keywords

clustering r
Last synced: 11 months ago · JSON representation

Repository

Merged consensus clustering to assess and improve class discovery with microarray data

Basic Info
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
clustering r
Created over 4 years ago · Last pushed over 4 years ago
Metadata Files
Readme

README.md

clusterCons - a package for consensus clustering in R

Calculate the Consensus Clustering Result from Re-Sampled Clustering Experiments with the Option of Using Multiple Algorithms and Parameters

DOI

Description

clusterCons contains functions for the calculation of robustness measures for clusters and cluster membership based on consensus matrices generated from bootstrapped clustering experiments in which a random proportion of rows of the data set are used in each individual clustering. This allows the user to prioritise clusters and the members of clusters based on their consistency in this regime.

The functions allow the user to select several algorithms to use in the re-sampling scheme and with any of the parameters that the algorithm would normally take.

Installation

The package can be installed from either .tar.gz (*nix) or .ZIP (windows) executables via the release on the right hand side of this web-page. These can be installed using the usual methods for R package installation either at the command line or within R.

clusterCons has recently been updated to be compatible with R version 4.1.2 and is now available on the CRAN repository after an absence of a few years. You can access it directly here - https://cran.r-project.org/package=clusterCons

Owner

  • Name: Biomedical Informatics Group
  • Login: biomedicalinformaticsgroup
  • Kind: organization
  • Email: ian.simpson@ed.ac.uk
  • Location: Edinburgh, Scotland, UK.

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 9
  • Total Committers: 1
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Ian Simpson i****n@e****k 9
Committer Domains (Top 20 + Academic)
ed.ac.uk: 1

Issues and Pull Requests

Last synced: almost 2 years ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Packages

  • Total packages: 2
  • Total downloads:
    • cran 280 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 3
    (may contain duplicates)
  • Total versions: 6
  • Total maintainers: 1
cran.r-project.org: clusterCons

Consensus Clustering using Multiple Algorithms and Parameters

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 3
  • Downloads: 280 Last month
Rankings
Dependent repos count: 16.5%
Forks count: 27.8%
Average: 28.6%
Dependent packages count: 28.8%
Stargazers count: 30.9%
Downloads: 39.2%
Maintainers (1)
ian.simpson@ed.ac.uk
Last synced: over 1 year ago
conda-forge.org: r-clustercons
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Dependent packages count: 51.2%
Average: 52.2%
Forks count: 61.1%
Stargazers count: 62.4%
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • RColorBrewer * depends
  • apcluster * depends
  • cluster * depends
  • grid * depends
  • lattice * depends
  • methods * depends
  • latticeExtra * suggests