Science Score: 20.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
1 of 4 committers (25.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.0%) to scientific vocabulary
Keywords
Repository
Biodiversity data Visualizations in R
Basic Info
- Host: GitHub
- Owner: vijaybarve
- Language: R
- Default Branch: master
- Size: 217 KB
Statistics
- Stars: 28
- Watchers: 5
- Forks: 12
- Open Issues: 29
- Releases: 0
Topics
Metadata Files
README.md
bdvis
About
Biodiversity Data Visualizations using R. This package offers a set of functions to visualize biodiversity occurrence data through R. Please check the paper describing the package Barve, V., and J. Otegui. 2016. bdvis: visualizing biodiversity data in R. Bioinformatics:btw333. https://academic.oup.com/bioinformatics/article/32/19/3049/2196391
The development of the package started as a Google Summer of Code project.
Installation
r
install.packages("bdvis")
require(bdvis)
Packages bdvis suggests
(for the purpose of building examples) + rinat
Functions currently available
For the sake of examples, we will work with some data obtained using the package
rinat
r
install.packages("rinat")
require(rinat) # Data download might take some time
inat <- get_inat_obs_project("reptileindia")
inat <- format_bdvis(inat,source='rinat')
inat <- inat[,c("id","Date_collected", "Latitude", "Longitude",
"Scientific_name", "Cell_id", "Centi_cell_id")]
bdsummary
r
bdsummary(inat)
mapgrid
r
mapgrid(inat,ptype="records",bbox=c(60,100,5,40))
mapgrid(inat,ptype="records",bbox=c(60,100,5,40),gridscale=0.1)
tempolar
r
tempolar(inat, color="green", title="iNaturalist daily", plottype="r", timescale="d")
tempolar(inat, color="blue", title="iNaturalist weekly", plottype="p", timescale="w")
tempolar(inat, color="red", title="iNaturalist monthly", plottype="r", timescale="m")
taxotree
r
inat=gettaxo(inat)
taxotree(inat)
chronohorogram
r
chronohorogram(inat)
bdcomplete
r
comp=bdcomplete(inat,recs=5)
mapgrid(comp,ptype="complete",bbox=c(60,100,5,40))
distrigraph
r
distrigraph(inat,ptype="cell",col="tomato")
distrigraph(inat,ptype="species",ylab="Species")
distrigraph(inat,ptype="efforts",col="red")
distrigraph(inat,ptype="efforts",col="red",type="s")
distrigraph(inat,ptype="efforts",col="red",cumulative=T,type="l")
distrigraph(inat,ptype="effortspecies",col="red",cumulative=T,type="l")
bdcalendarheat
r
bdcalendarheat(inat)
Owner
- Name: Vijay Barve
- Login: vijaybarve
- Kind: user
- Location: Gainesville, FL
- Website: http://vijaybarve.net/
- Repositories: 36
- Profile: https://github.com/vijaybarve
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| VijayBarve | v****e@r****m | 105 |
| Vijaybarve | v****e@f****u | 5 |
| Javier Otegui | j****i@g****m | 2 |
| Umang Majumder | 5****D | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: almost 2 years ago
All Time
- Total issues: 99
- Total pull requests: 3
- Average time to close issues: 8 months
- Average time to close pull requests: about 1 hour
- Total issue authors: 15
- Total pull request authors: 3
- Average comments per issue: 1.3
- Average comments per pull request: 0.33
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- vijaybarve (65)
- jotegui (11)
- SrishtiJ1305 (8)
- ZeroDawn0D (3)
- Rishi0812 (2)
- siddhantdubey (1)
- hxxr (1)
- SAYEDMAJADK (1)
- pratishrai (1)
- vamsikrishna97 (1)
- trashbirdecology (1)
- YADHUKRISHNAKG (1)
- Rahulzoology (1)
- nlxbach (1)
Pull Request Authors
- jotegui (1)
- ZeroDawn0D (1)
- boyanangelov (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 487 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 13
- Total maintainers: 1
cran.r-project.org: bdvis
Biodiversity Data Visualizations
- Documentation: http://cran.r-project.org/web/packages/bdvis/bdvis.pdf
- License: GPL-3
- Status: removed
-
Latest release: 0.2.37
published over 2 years ago
Rankings
Maintainers (1)
Dependencies
- chron * imports
- ggplot2 * imports
- lattice * imports
- maps * imports
- plotrix * imports
- plyr * imports
- rgdal * imports
- sqldf * imports
- taxize * imports
- treemap * imports
- rinat * suggests