Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Scientific vocabulary similarity
Low similarity (15.5%) to scientific vocabulary
Repository
Visualize data on spirals
Basic Info
- Host: GitHub
- Owner: jokergoo
- License: other
- Language: R
- Default Branch: master
- Homepage: https://jokergoo.github.io/spiralize/
- Size: 191 MB
Statistics
- Stars: 154
- Watchers: 5
- Forks: 13
- Open Issues: 2
- Releases: 0
Metadata Files
README.md
Visualize Data on Spirals 
Features
The package spiralize visualizes data along an Archimedean spiral. It has two major advantages for visualization:
- It is able to visualize data with very long axis with high resolution.
- It is efficient for time series data to reveal periodic patterns.
Documentation
https://jokergoo.github.io/spiralize/
Citation
Zuguang Gu, et al., spiralize: an R package for Visualizing Data on Spirals, Bioinformatics, 2021. https://doi.org/10.1093/bioinformatics/btab778
Install
The package is available on CRAN and can be installed by:
r
install.packages("spiralize")
If you want the latest version, install it directly from GitHub:
r
library(devtools)
install_github("jokergoo/spiralize")
Usage
It includes three steps:
- initialize the spiral,
- add a track,
- add graphics to the track.
Step 2 and 3 can be applied multiple times to allow multiple-track visualization along the spiral.
The code for making spiral plot looks likes follows:
r
library(spiralize)
spiral_initialize(...)
spiral_track(...)
spiral_points(...)
...
Graphics
Complex plots are baiscally constructed from simple graphics. Here there are following low-level graphics functions:
spiral_points()spiral_lines()spiral_rect()spiral_segments()spiral_polygon()spiral_bars()spiral_text()spiral_axis()spiral_yaxis()spiral_raster()
Particularlly, horizon chart is very suitable to put on the spiral, thus there is one function for this:
spiral_horizon()
Spiral plot can also visualize dendrograms with large number of leaves, thus there are following two functions:
spiral_dendrogram()spiral_phylo()
Examples
- Difference of ggplot2 daily downloads to the mean of the current year (2015-2021). Each loop contains 52 weeks so that same weeks in different years locate at the same angle in the polar coordinates.
- A phylogenetic life tree with 50645 species.
- The spiral COVID-19 Shiny app
License
MIT @ Zuguang Gu
Owner
- Name: Zuguang Gu
- Login: jokergoo
- Kind: user
- Location: Heidelberg, Germany
- Company: German Cancer Research Center
- Website: http://jokergoo.github.io
- Repositories: 28
- Profile: https://github.com/jokergoo
A bioinformagician
GitHub Events
Total
- Watch event: 6
Last Year
- Watch event: 6
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Zuguang Gu | j****o@g****m | 57 |
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 44
- Total pull requests: 0
- Average time to close issues: 9 days
- Average time to close pull requests: N/A
- Total issue authors: 5
- Total pull request authors: 0
- Average comments per issue: 0.2
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jokergoo (39)
- ogreyesp (2)
- WenChangYu (1)
- hwrightson (1)
- davetang (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
-
Total downloads:
- cran 618 last-month
-
Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 1
(may contain duplicates) - Total versions: 11
- Total maintainers: 1
cran.r-project.org: spiralize
Visualize Data on Spirals
- Homepage: https://github.com/jokergoo/spiralize
- Documentation: http://cran.r-project.org/web/packages/spiralize/spiralize.pdf
- License: MIT + file LICENSE
-
Latest release: 1.1.0
published about 2 years ago
Rankings
Maintainers (1)
conda-forge.org: r-spiralize
- Homepage: https://github.com/jokergoo/spiralize
- License: MIT
-
Latest release: 1.0.6
published almost 4 years ago
Rankings
Dependencies
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- R >= 3.6.0 depends
- grid * depends
- GetoptLong >= 0.1.8 imports
- GlobalOptions >= 0.1.1 imports
- circlize * imports
- grDevices * imports
- lubridate * imports
- methods * imports
- stats * imports
- utils * imports
- ComplexHeatmap * suggests
- ape * suggests
- bezier * suggests
- cowplot * suggests
- cranlogs * suggests
- dendextend * suggests
- grImport * suggests
- grImport2 * suggests
- jpeg * suggests
- knitr * suggests
- magick * suggests
- png * suggests
- rmarkdown * suggests
- tiff * suggests