Data

Tools

Indexes

Applications

Experiments

Open Source Science

hirestec

https://github.com/janlisec/hirestec

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# HiResTEC


[![R-CMD-check](https://github.com/janlisec/HiResTEC/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/janlisec/HiResTEC/actions/workflows/R-CMD-check.yaml)
[![CRAN status](https://www.r-pkg.org/badges/version/HiResTEC)](https://CRAN.R-project.org/package=HiResTEC)
[![Static Badge](https://img.shields.io/badge/doi-10.1021/acs.analchem.8b00356-yellow.svg)](https://doi.org/10.1021/acs.analchem.8b00356)


Identifying labeled compounds in a ^13^C-tracer experiment in non-targeted fashion 
is a cumbersome process. This package facilitates such type of analyses by 
providing high level quality control plots, spectra deconvolution and evaluation 
and performing a multitude of tests in an automatic fashion. The main idea is 
to use changing intensity ratios of ion pairs from a peak list, generated with 
i.e. `xcms`, as candidates and evaluate those against base peak chromatograms 
and spectra information within the raw measurement data automatically. The 
functionality is described in detail in .

## Installation

You can install the development version of HiResTEC using:

``` r
# install.packages("devtools")
devtools::install_github("janlisec/HiResTEC")
```

## Example

For a quick tour on the workflow of `HiResTEC` have a look at the 
[vignette](https://janlisec.github.io/HiResTEC/articles/HiResTEC-workflow.html).

Owner

  • Name: JaLi
  • Login: janlisec
  • Kind: user

GitHub Events

Total
  • Push event: 16
  • Create event: 1
Last Year
  • Push event: 16
  • Create event: 1

Packages

  • Total packages: 1
  • Total downloads:
    • cran 265 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: HiResTEC

Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 265 Last month
Rankings
Dependent packages count: 29.8%
Average: 34.2%
Dependent repos count: 35.5%
Downloads: 37.4%
Maintainers (1)
jan.lisec@bam.de
Last synced: 11 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 2.10.0 depends
  • CorMID * imports
  • InterpretMSSpectrum * imports
  • beeswarm * imports
  • openxlsx * imports
  • plyr * imports