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prioriactions

Multi-action conservation planning

https://github.com/prioriactions/prioriactions

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (19.6%) to scientific vocabulary

Keywords

conservation conservation-plan optimization prioritization rpackage threats
Last synced: 6 months ago · JSON representation

Repository

Multi-action conservation planning

Basic Info
Statistics
  • Stars: 10
  • Watchers: 0
  • Forks: 0
  • Open Issues: 1
  • Releases: 2
Topics
conservation conservation-plan optimization prioritization rpackage threats
Created over 4 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# Multi-Action Conservation Planning 


![CRAN/METACRAN](https://www.r-pkg.org/badges/version/prioriactions)
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
[![R-CMD-check](https://github.com/prioriactions/prioriactions/workflows/R-CMD-check/badge.svg)](https://github.com/prioriactions/prioriactions/actions)


**This project was financed by the National Agency of Research and Development, ANID, Chile,  through the grant FONDECYT N.1180670 and through the Complex Engineering Systems Institute PIA/BASAL AFB180003. Also it has received funding from the European Union’s H2020 research and innovation program under the Marie Sklodowska-Curie grant agreement N.691149 (SuFoRun).**

## Overview

The `prioriactions` package allows you to create and solve conservation planning problems that involve multiple threats and actions. This uses techniques of integer linear programming (ILP), obtaining optimal solutions or with a certain degree of guaranteed quality (gap). Due to its flexibility, the package offers the possibility of creating different mathematical models with multiple requirements (spatial, budget requirements, etc.). All the included models are presented in detail in Salgado-Rojas et al. (2020). The package has a variety of commercial and open-source exact algorithm solvers that guarantee to find optimal solutions.


## Installation

Package `prioriactions` can be found at CRAN, where it is updated every few months. Installation from CRAN can be done via:

```{r, eval = FALSE}
install.packages("prioriactions")
```

Also, the latest development version of `prioriactions` can be installed from [GitHub](https://github.com/prioriactions/prioriactions/) using the following code (If you are using Windows, it is necessary to install [Rtools](https://cran.r-project.org/bin/windows/Rtools/) beforehand).

```{r, eval = FALSE}
if (!require(remotes)) install.packages("remotes")
remotes::install_github("prioriactions/prioriactions")
```

## Usage

You can browse the package documentation online at
.

If this is your first time using `prioriactions`, we strongly recommend reading the
[Introduction to prioriactions](https://prioriactions.github.io/prioriactions/articles/prioriactions.html)
vignette.

If you believe you've found a bug in `prioriactions`, please file a bug (and, if
possible, a [reproducible example](https://reprex.tidyverse.org)) at
.

## References

+ Salgado-Rojas J, Alvarez-Miranda E, Hermoso V, Garcia-Gonzalo J, Weintraub A. _A mixed integer programming approach for multi-action planning for threat management_. Ecological Modelling 2020; 418:108901. DOI: .

Owner

  • Name: prioriactions
  • Login: prioriactions
  • Kind: organization

GitHub Events

Total
  • Issues event: 1
Last Year
  • Issues event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 53
  • Total Committers: 3
  • Avg Commits per committer: 17.667
  • Development Distribution Score (DDS): 0.264
Past Year
  • Commits: 9
  • Committers: 1
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
josesalgr j****o@u****u 39
josesalgr j****j@g****m 9
José Salgado-Rojas 4****r 5
Committer Domains (Top 20 + Academic)
upc.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 1
  • Total pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 minute
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • josesalgr (1)
Pull Request Authors
  • josesalgr (3)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 264 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 8
  • Total maintainers: 1
proxy.golang.org: github.com/prioriactions/prioriactions
  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Dependent repos count: 5.7%
Average: 9.4%
Stargazers count: 9.8%
Forks count: 16.8%
Last synced: 6 months ago
cran.r-project.org: prioriactions

Multi-Action Conservation Planning

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 264 Last month
Rankings
Stargazers count: 21.1%
Forks count: 28.8%
Dependent packages count: 29.8%
Average: 31.2%
Dependent repos count: 35.5%
Downloads: 40.6%
Maintainers (1)
jose.salgroj@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Matrix * imports
  • Rcpp * imports
  • assertthat >= 0.2.0 imports
  • dplyr * imports
  • magrittr * imports
  • proto * imports
  • rlang * imports
  • tidyr * imports
  • Rcplex >= 0.3.5 suggests
  • Rsymphony >= 0.1 suggests
  • data.table * suggests
  • gurobi >= 9.0 suggests
  • knitr * suggests
  • markdown * suggests
  • methods * suggests
  • purrr * suggests
  • raster * suggests
  • readr * suggests
  • rmarkdown * suggests
  • roxygen2 * suggests
  • slam * suggests
  • sp * suggests
  • testthat >= 3.0.0 suggests
  • tibble * suggests
  • tmap * suggests
  • viridis * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite