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intrinsic

Public repository for the R package intRinsic

https://github.com/fradenti/intrinsic

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Public repository for the R package intRinsic

Basic Info
  • Host: GitHub
  • Owner: Fradenti
  • License: other
  • Language: R
  • Default Branch: main
  • Size: 577 KB
Statistics
  • Stars: 13
  • Watchers: 1
  • Forks: 4
  • Open Issues: 0
  • Releases: 8
Created over 5 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# intRinsic v1.1.0 



[![R-CMD-check](https://github.com/Fradenti/intRinsic/workflows/R-CMD-check/badge.svg)](https://github.com/Fradenti/intRinsic/actions)
[![CRAN](https://www.r-pkg.org/badges/version/intRinsic)](https://cran.r-project.org/package=intRinsic)
[![Last Commit](https://img.shields.io/github/last-commit/fradenti/intRinsic)](https://github.com/fradenti/intRinsic)
[![Downloads (monthly)](https://cranlogs.r-pkg.org/badges/intRinsic?color=brightgreen)](https://www.r-pkg.org/pkg/intRinsic)
[![Downloads (total)](https://cranlogs.r-pkg.org/badges/grand-total/intRinsic?color=brightgreen)](https://www.r-pkg.org/pkg/intRinsic)
[![JSS](https://img.shields.io/badge/JSS-10.18637%2Fjss.v040.i08-brightgreen)](https://www.jstatsoft.org/article/view/v106i09)


A package with functions to estimate the intrinsic dimension of a dataset via likelihood-based approaches. 
Specifically, the package implements the `TWO-NN` and `Gride` estimators and the `Hidalgo` Bayesian mixture model.

To install the package from CRAN, run
```r
install.packages("intRinsic")
```

To install the package from this GitHub repository, run
```r
# install.packages("remotes")

#Turn off warning-error-conversion regarding package versions
Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")

#install from github
remotes::install_github("Fradenti/intRinsic")
```

Simple example on Swissroll dataset

```r
library(intRinsic)
X <- Swissroll(2000)
twonn(X)
```

The vignette for this package has been published in the `Journal of Statistical Software`. The article can be found at [this link](https://doi.org/10.18637/jss.v106.i09).

Please help me improve this package by reporting suggestions, typos, and issues at [this link](https://github.com/Fradenti/intRinsic/issues).

Please note that the previous versions of the package (from `v0.1.0` to `v1.0.2`) are still available as GitHub Releases at [this page](https://github.com/Fradenti/intRinsic/releases).

Owner

  • Name: Francesco Denti
  • Login: Fradenti
  • Kind: user
  • Location: Milan, IT

Assistant Professor (RtdA) @ Università Cattolica del Sacro Cuore

GitHub Events

Total
  • Watch event: 3
Last Year
  • Watch event: 3

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 70
  • Total Committers: 2
  • Avg Commits per committer: 35.0
  • Development Distribution Score (DDS): 0.386
Past Year
  • Commits: 40
  • Committers: 1
  • Avg Commits per committer: 40.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
fradenti f****l@g****m 43
Francesco Denti f****i@u****u 27
Committer Domains (Top 20 + Academic)
uci.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 1
  • Total pull requests: 1
  • Average time to close issues: about 3 hours
  • Average time to close pull requests: 2 days
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • selwyni (1)
Pull Request Authors
  • Fradenti (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 244 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: intRinsic

Likelihood-Based Intrinsic Dimension Estimators

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 244 Last month
Rankings
Forks count: 12.8%
Stargazers count: 17.0%
Dependent packages count: 29.8%
Average: 33.6%
Dependent repos count: 35.5%
Downloads: 73.0%
Maintainers (1)
francescodenti.personal@gmail.com
Last synced: about 1 year ago

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • FNN * imports
  • MCMCpack * imports
  • Rcpp * imports
  • dplyr * imports
  • ggplot2 * imports
  • knitr * imports
  • latex2exp * imports
  • reshape2 * imports
  • rlang * imports
  • salso * imports
  • stats * imports
  • utils * imports
.github/workflows/check-standard.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite