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refseqr

Common Computational Operations Working with RefSeq Entries (GenBank, NCBI)

https://github.com/jdieramon/refseqr

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.7%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Common Computational Operations Working with RefSeq Entries (GenBank, NCBI)

Basic Info
  • Host: GitHub
  • Owner: jdieramon
  • License: other
  • Language: HTML
  • Default Branch: master
  • Homepage:
  • Size: 495 KB
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 4
Created over 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

Project Status: Active - The project has reached a stable, usable state and is being actively developed.

License: MIT

DOI

refseqR

Common computational operations working with RefSeq (GenBank accessions, NCBI).

Installation

Get the released version from CRAN:
{r} install.packages("refseqR")

Or the development version from github:
{r} devtools::install_github("jdieramon/refseqR")

Citation

The refseqR manuscript has been published in Bioinformatics Advances. If you use refseqR in your research, please consider citing it :

{r} Jose V Die, refseqR: An R package for common computational operations with records on RefSeq collection, Bioinformatics Advances, 2024;, vbae122, https://doi.org/10.1093/bioadv/vbae122

Owner

  • Name: Jose V. Die
  • Login: jdieramon
  • Kind: user
  • Location: USA

GitHub Events

Total
  • Issues event: 3
  • Issue comment event: 9
  • Push event: 3
Last Year
  • Issues event: 3
  • Issue comment event: 9
  • Push event: 3

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: 20 days
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 5.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 20 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 5.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • seandavi (2)
  • MauriAndresMU1313 (1)
  • jchiron (1)
  • llrs (1)
  • JulieBlasquiz (1)
Pull Request Authors
  • llrs (4)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 475 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
cran.r-project.org: refseqR

Common Computational Operations Working with RefSeq Entries (GenBank)

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 475 Last month
Rankings
Dependent packages count: 28.0%
Dependent repos count: 36.0%
Average: 49.7%
Downloads: 84.9%
Maintainers (1)
jose.die@uco.es
Last synced: 10 months ago