spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
Science Score: 49.0%
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Found 2 DOI reference(s) in README -
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○Scientific vocabulary similarity
Low similarity (13.1%) to scientific vocabulary
Repository
R package for statistical inference of spatiotemporal partially observed Markov processes
Basic Info
- Host: GitHub
- Owner: spatPomp-org
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://spatpomp-org.github.io/spatPomp/
- Size: 9.41 MB
Statistics
- Stars: 2
- Watchers: 2
- Forks: 2
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
The spatPomp package
What is this package?
The spatPomp package provides facilities for inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models.
To do so, it relies on and extends a number of facilities that the pomp package provides for inference on time series data using partially-observed Markov process (POMP) models.
Why use spatPomp?
The spatPomp package concerns models consisting of a collection of interacting units.
The methods in spatPomp may be applicable whether or not these units correspond to spatial locations.
Installing spatPomp
To install the package from this GitHub source, type the following command into your console (assumes you have the devtools package installed):
devtools::install_github('spatPomp-org/spatPomp').
The CRAN version of spatPomp can be installed by install.packages("spatPomp").
Documentation
An overview of the package and its motivation can be found in [Asfaw et al. (2024, Journal of Open Source Software)[https://doi.org/10.21105/joss.07008].
A longer tutorial is at https://arxiv.org/abs/2101.01157.
For further information, including a bibliography, see the spatPomp website.
Owner
- Name: SpatPomp Organization
- Login: spatPomp-org
- Kind: organization
- Repositories: 1
- Profile: https://github.com/spatPomp-org
GitHub Events
Total
- Create event: 5
- Issues event: 3
- Release event: 1
- Watch event: 2
- Issue comment event: 6
- Push event: 11
- Pull request event: 1
- Fork event: 2
Last Year
- Create event: 5
- Issues event: 3
- Release event: 1
- Watch event: 2
- Issue comment event: 6
- Push event: 11
- Pull request event: 1
- Fork event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 2
- Total pull requests: 3
- Average time to close issues: 3 days
- Average time to close pull requests: about 18 hours
- Total issue authors: 1
- Total pull request authors: 2
- Average comments per issue: 3.0
- Average comments per pull request: 0.33
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 3
- Average time to close issues: 3 days
- Average time to close pull requests: about 18 hours
- Issue authors: 1
- Pull request authors: 2
- Average comments per issue: 3.0
- Average comments per pull request: 0.33
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- juliansgottfried (2)
Pull Request Authors
- kunyanghe21 (2)
- juliansgottfried (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 576 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 16
- Total maintainers: 1
cran.r-project.org: spatPomp
Inference for Spatiotemporal Partially Observed Markov Processes
- Homepage: https://github.com/spatPomp-org/spatPomp
- Documentation: http://cran.r-project.org/web/packages/spatPomp/spatPomp.pdf
- License: GPL-3
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Latest release: 1.1.0
published 6 months ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v4 composite
- actions/download-artifact v4 composite
- actions/upload-artifact v4 composite
- ncipollo/release-action v1 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- r-lib/actions/setup-tinytex v2 composite
- actions/checkout v4 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- R >= 4.1 depends
- methods * depends
- pomp >= 5.4 depends
- abind * imports
- dplyr * imports
- foreach * imports
- ggplot2 * imports
- rlang * imports
- stringr * imports
- tidyr * imports
- doParallel >= 1.0.11 suggests
- doRNG * suggests
- parallel * suggests