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detzrcr

An R-package for comparing detrital zircon samples

https://github.com/magnuskristoffersen/detzrcr

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

An R-package for comparing detrital zircon samples

Basic Info
  • Host: GitHub
  • Owner: magnuskristoffersen
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 1.3 MB
Statistics
  • Stars: 9
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created about 10 years ago · Last pushed over 3 years ago
Metadata Files
Readme

README.md

detzrcr

R-CMD-check CRAN_Status_Badge DOI <!-- badges: end -->

detzrcr is an R-package for plotting and running statistical tests on univariate (U-Pb age) and bivariate (U-Pb age and Lu-Hf data) detrital zircon data for comparison between samples. The package uses a user interface built with shiny and produces publication quality figures using ggplot2.

Installation

Install either from CRAN

R install.packages("detzrcr")

or install the development version from github (requires devtools)

```R

install.packages("devtools")

devtools::install_github("magnuskristoffersen/detzrcr") ```

Use package

Launch user interface with

R library("detzrcr") run_detzrcr()

For the sake of simplicity input data is required to be a csv-file which contains at least a column containing the U-Pb age data. This column must be called age, associated uncertainty and discordancy (if included) must be in columns uncert and disc, respectively. All ages must be in Ma.

The file can contain the Lu-Hf data in two ways: measured 176/177Hf and measured Lu/Hf in columns called hfhf and luhf, respectively; or a column with initial epsilon-Hf with the name ehf_i.

Several samples can be included in the csv-file and which one(s) to plot can be choosen interactively in the user interface. For this to work a column called sample must be present, and each analysis (i.e. each row) must contain the name of the sample it belongs to in this column.

Detrital zircon U-Pb and Lu-Hf example data from the Natal Group, KwaZulu-Natal, South Africa (Kristoffersen et al. 2016) are included in the package.

References

Kristoffersen, M., Andersen, T., Elburg, M.A., Watkeys, M.K., 2016. Detrital zircon in a supercontinental setting: locally derived and far-transported components in the Ordovician Natal Group, South Africa. J. Geol. Soc. London. 173, 203-215. https://dx.doi.org/10.1144/jgs2015-012

GitHub Events

Total
Last Year

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 168
  • Total Committers: 3
  • Avg Commits per committer: 56.0
  • Development Distribution Score (DDS): 0.012
Top Committers
Name Email Commits
Magnus Kristoffersen m****n@g****o 166
Magnus Kristoffersen s****k@g****m 1
magnuskristoffersen m****n@u****m 1
Committer Domains (Top 20 + Academic)
geo.uio.no: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 370 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 13
  • Total maintainers: 1
cran.r-project.org: detzrcr

Compare Detrital Zircon Suites

  • Versions: 13
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 370 Last month
Rankings
Stargazers count: 21.1%
Forks count: 21.9%
Downloads: 25.0%
Average: 26.6%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Maintainers (1)
magnus.kristoffersen@geo.uio.no
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • DT * imports
  • MASS * imports
  • ggplot2 * imports
  • graphics * imports
  • shiny * imports
  • stats * imports
  • utils * imports
  • knitr * suggests
  • rmarkdown * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite