Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.6%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: tinnlab
- Language: R
- Default Branch: main
- Size: 293 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
RCPA
The R package for Consensus Pathway Analysis (RCPA) implements a complete analysis pipeline including: i) download and process data from NCBI Gene Expression Omnibus, ii) perform differential analysis using techniques developed for both microarray and sequencing data, iii) perform systems-level analysis using different methods for enrichment analysis and topology-based (TB) analysis, iv) perform meta-analysis and consensus analysis, and v) visualize analysis results and explore significantly impacted pathways across multiple analyses. The package supports the analysis of more than 1,000 species, two pathway databases, three differential analysis techniques, eight pathway analysis tools, six meta-analysis methods, and two consensus analysis techniques.
How to install
- The package can be installed from CRAN or this repository.
- Using CRAN:
install.packages('RCPA') - Using devtools:
- Install the package using:
devtools::install_github('tinnlab/RCPA')
- Install the package using:
Tutorial
- A detailed tutorial on how to use scDHA package is available in Jupyter Notebook format, which can be accessed at this Example.
Owner
- Name: tinnlab
- Login: tinnlab
- Kind: organization
- Repositories: 2
- Profile: https://github.com/tinnlab
GitHub Events
Total
- Issue comment event: 2
- Push event: 9
- Pull request event: 8
- Fork event: 1
Last Year
- Issue comment event: 2
- Push event: 9
- Pull request event: 8
- Fork event: 1
Packages
- Total packages: 1
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Total downloads:
- cran 381 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 9
- Total maintainers: 1
cran.r-project.org: RCPA
Consensus Pathway Analysis
- Documentation: http://cran.r-project.org/web/packages/RCPA/RCPA.pdf
- License: GPL-3
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Latest release: 0.2.7
published 12 months ago