negenes
Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.
Science Score: 33.0%
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 6 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
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○Scientific vocabulary similarity
Low similarity (7.5%) to scientific vocabulary
Repository
Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.
Basic Info
Statistics
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
R/negenes
R/negenes is an R package for estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler.
See the following:
Lamichhane et al. (2003) A post-genomic method for predicting essential genes at subsaturation levels of mutagenesis: application to Mycobacterium tuberculosis. Proc Natl Acad Sci USA 100:7213-7218 (doi:10.1073/pnas.1231432100)
Blades NJ, Broman KW (2002) Estimating the number of essential genes in a genome by random transposon mutagenesis. Technical Report MS02-20, Department of Biostatistics, Johns Hopkins University, Baltimore, MD
License
This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, version 3, as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU General Public License for more details.
A copy of the GNU General Public License, version 3, is available at https://www.r-project.org/Licenses/GPL-3
Owner
- Name: Karl Broman
- Login: kbroman
- Kind: user
- Location: Madison, Wisconsin, USA
- Company: University of Wisconsin-Madison
- Website: https://kbroman.org
- Repositories: 412
- Profile: https://github.com/kbroman
Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.
GitHub Events
Total
- Release event: 1
- Push event: 3
- Create event: 2
Last Year
- Release event: 1
- Push event: 3
- Create event: 2
Committers
Last synced: over 3 years ago
All Time
- Total Commits: 53
- Total Committers: 2
- Avg Commits per committer: 26.5
- Development Distribution Score (DDS): 0.094
Top Committers
| Name | Commits | |
|---|---|---|
| Karl Broman | k****n@g****m | 48 |
| Karl Broman | k****n@b****u | 5 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
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Issue Labels
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Packages
- Total packages: 1
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Total downloads:
- cran 257 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 14
- Total maintainers: 1
cran.r-project.org: negenes
Estimating the Number of Essential Genes in a Genome
- Homepage: https://github.com/kbroman/negenes
- Documentation: http://cran.r-project.org/web/packages/negenes/negenes.pdf
- License: GPL (≥ 3)
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Latest release: 1.2
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.10.1 depends
- stats * imports
- roxygen2 * suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite