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equil2

Calculate Urinary Saturation with the EQUIL2 Algorithm

https://github.com/billdenney/equil2

Science Score: 13.0%

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    CITATION.cff file
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    Found 1 DOI reference(s) in README
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    Low similarity (13.6%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Calculate Urinary Saturation with the EQUIL2 Algorithm

Basic Info
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed over 3 years ago
Metadata Files
Readme License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# equil2


[![Codecov test coverage](https://codecov.io/gh/billdenney/equil2/branch/main/graph/badge.svg)](https://app.codecov.io/gh/billdenney/equil2?branch=main)
[![R-CMD-check](https://github.com/billdenney/equil2/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/billdenney/equil2/actions/workflows/R-CMD-check.yaml)
[![CRAN status](https://www.r-pkg.org/badges/version/equil2)](https://CRAN.R-project.org/package=equil2)


The goal of equil2 is to calculate urinary saturation with the EQUIL2 algorithm.

This program is intended for research use, only.  The code within is translated
from EQUIL2 Visual Basic code based on Werness, et al 1985 to R (see reference
below).  The Visual Basic code was kindly provided by Dr. John Lieske of the
Mayo Clinic.

Werness PG, Brown CM, Smith LH, Finlayson B. Equil2: A Basic Computer Program
for the Calculation of Urinary Saturation. Journal of Urology.
1985;134(6):1242-1244. doi:10.1016/S0022-5347(17)47703-2

## Installation

You can install the development version of equil2 like so:

``` r
remotes::install_github("billdenney/equil2")
```

## Example

This is a basic example which shows you how to calculate supersaturation:

```{r example}
library(equil2)
equil2(
  sodium_mEq_L=units::set_units(45, "mmol_sodium/L"),
  potassium_mEq_L=units::set_units(55, "mmol_potassium/L"),
  calcium_mg_dL=units::set_units(15, "mg_calcium/dL"),
  magnesium_mg_dL=units::set_units(15, "mg_magnesium/dL"),
  ammonia_mEq_L=units::set_units(10, "ug_ammonia/dL"),
  chloride_mEq_L=units::set_units(75, "mmol_chloride/L"),
  phosphate_mg_dL=units::set_units(100, "mg_phosphate/dL"),
  sulfate_mg_dL=units::set_units(20, "mEq_sulfate/L"),
  oxalate_mg_dL=units::set_units(10, "mg_oxalate/L"),
  citrate_mg_dL=units::set_units(400, "mg_citrate/L"),
  pH=5.5,
  urate_mg_dL=units::set_units(50, "mg_urate/dL")
)
```

Owner

  • Name: Bill Denney
  • Login: billdenney
  • Kind: user
  • Location: Massachusetts, USA
  • Company: Human Predictions LLC

GitHub Events

Total
  • Fork event: 1
Last Year
  • Fork event: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: about 24 hours
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 5.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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  • PJGator (1)
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Packages

  • Total packages: 1
  • Total downloads:
    • cran 186 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
cran.r-project.org: equil2

Calculate Urinary Saturation with the EQUIL2 Algorithm

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 186 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 42.2%
Downloads: 81.8%
Maintainers (1)
wdenney@humanpredictions.com
Last synced: 11 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • units * imports
  • covr * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • spelling * suggests
  • testthat >= 3.0.0 suggests