Data

Tools

Indexes

Applications

Experiments

Open Source Science

bayclumpr

An R package to conduct calibrations and reconstructions using clumped isotopes

https://github.com/tripati-lab/bayclumpr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

An R package to conduct calibrations and reconstructions using clumped isotopes

Basic Info
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 4 years ago · Last pushed 12 months ago
Metadata Files
Readme Contributing License

README.md

R-CMD-check CodeFactor

The bayclumpr R Package

Bayesian methods for clumped isotope paleothermometry

What is bayclumpr?

To support the use of Bayesian models and the analytical framework developed in Román-Palacios et al. (2022) for clumped isotope calibration and for temperature reconstructions, and to facilitate comparisons of Bayesian and classical models, we present a self-contained R package and associated Shiny Dashboard application, bayclumpr and BayClump, respectively. bayclumpr (and BayClump) fits both frequentist and Bayesian linear regressions to calibration datasets and performs temperature reconstructions under both frameworks. You can find more details on how to use bayclumpr in this website.

What is BayClump?

BayClump is an associated Shiny Dashboard application that is associated with the bayclumpr R package. All the functions implemented in BayClump are sourced from bayclumpr. We eveloped BayClump to allow users with less coding experience to be able to access standarized resources to calibrate and derive reconstructions using clumped isotope datasets. You can access BayClump directly from here.

Installing bayclumpr

The latest version of bayclumpr can be installed directly from our GitHub repository using the following lines of code from R

library(devtools) install_github("Tripati-Lab/bayclumpr")

Contributing

Please see our contributing guide.

Contact

Please see the package DESCRIPTION for package authors.

Owner

  • Name: Tripati-Lab
  • Login: Tripati-Lab
  • Kind: organization

GitHub Events

Total
  • Push event: 5
Last Year
  • Push event: 5

Issues and Pull Requests

Last synced: over 2 years ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 234 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
cran.r-project.org: bayclumpr

Bayesian Analysis of Clumped Isotope Datasets

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 234 Last month
Rankings
Dependent packages count: 29.8%
Dependent repos count: 35.4%
Average: 51.6%
Downloads: 89.7%
Maintainers (1)
cromanpa94@arizona.edu
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • IsoplotR * imports
  • deming * imports
  • loo * imports
  • parallel * imports
  • rstan * imports
  • stats * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action 4.1.4 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite