easybio
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 6 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.9%) to scientific vocabulary
Keywords
bioinformatics
cellmarker2
gsea
rna-seq
single-cell
Last synced: 6 months ago
·
JSON representation
Repository
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
Basic Info
Statistics
- Stars: 11
- Watchers: 0
- Forks: 1
- Open Issues: 1
- Releases: 1
Topics
bioinformatics
cellmarker2
gsea
rna-seq
single-cell
Created almost 3 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Changelog
License
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# easybio
[](https://CRAN.R-project.org/package=easybio)
[](https://github.com/person-c/easybio/actions/workflows/R-CMD-check.yaml)
## Installation and Usage
``` r
install.packages("easybio", repos = c("https://person-c.r-universe.dev", "https://cloud.r-project.org"))
```
To know how to use this package to do single cell annotation, see the [article](https://doi.org/10.1101/2024.09.14.609619).
参考这个[视频](https://www.bilibili.com/video/BV1Gk9BYTEz9/)。
## Stay up-to-date
To learn the difference between development version and CRAN version, see [NEWS](./NEWS.md).
## Citation
If you use the single-cell annotation functionality from `easybio`, consider citing:
- https://doi.org/10.1101/2024.09.14.609619
- https://doi.org/10.1093/nar/gkac947
Owner
- Name: HappyEveryday
- Login: person-c
- Kind: user
- Location: China
- Website: cying.org
- Repositories: 1
- Profile: https://github.com/person-c
GitHub Events
Total
- Watch event: 7
- Push event: 11
- Pull request event: 4
- Create event: 1
Last Year
- Watch event: 7
- Push event: 11
- Pull request event: 4
- Create event: 1
Packages
- Total packages: 1
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Total downloads:
- cran 329 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: easybio
Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
- Homepage: https://github.com/person-c/easybio
- Documentation: http://cran.r-project.org/web/packages/easybio/easybio.pdf
- License: MIT + file LICENSE
-
Latest release: 1.2.2
published 6 months ago
Rankings
Dependent packages count: 28.3%
Dependent repos count: 34.9%
Average: 49.9%
Downloads: 86.7%
Maintainers (1)
Last synced:
6 months ago
Dependencies
.github/workflows/check-standard.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION
cran
- R >= 2.10 depends
- R6 * imports
- data.table * imports
- ggplot2 * imports
- GEOquery * suggests
- clusterProfiler * suggests
- edgeR * suggests
- fgsea * suggests
- furrr * suggests
- future * suggests
- ggridges * suggests
- knitr * suggests
- limma * suggests
- org.Hs.eg.db * suggests
- parallel * suggests
- purrr * suggests
- rlang * suggests
- rmarkdown * suggests
- rvest * suggests
- stats * suggests
- survival * suggests
- survminer * suggests
- treemapify * suggests