Data

Tools

Indexes

Applications

Experiments

Open Source Science

baytrends

Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach

https://github.com/tetratech/baytrends

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (17.3%) to scientific vocabulary

Keywords

r-package
Last synced: 10 months ago · JSON representation

Repository

Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach

Basic Info
Statistics
  • Stars: 12
  • Watchers: 3
  • Forks: 4
  • Open Issues: 15
  • Releases: 9
Topics
r-package
Created over 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# baytrends




[![CRAN status](https://www.r-pkg.org/badges/version/baytrends)](https://cran.r-project.org/package=baytrends) 
Windows [![cran checks](https://badges.cranchecks.info/flavor/windows/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 
Linux [![cran checks](https://badges.cranchecks.info/flavor/linux/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 
OSX [![cran checks](https://badges.cranchecks.info/flavor/macos/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 

[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html) 
[![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/tetratech/baytrends/graphs/commit-activity)



The baytrends package was developed to enable users to evaluate long-term trends
in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach. The
model development includes selecting a GAM structure to describe nonlinear 
seasonally-varying changes over time, incorporation of hydrologic variability 
via either a river flow or salinity, the use of an intervention to deal with 
method or laboratory changes suspected to impact data values, and representation
of left- and interval-censored data. This approach, which is fully transferable
to other systems, allows for Chesapeake Bay water quality data to be evaluated 
in a statistically rigorous, yet flexible way to provide insights to a range of 
management- and research-focused questions.

## Installation

The CRAN version of baytrends from [CRAN](https://CRAN.R-project.org) 
can be installed with the code below.

``` r
install.packages("baytrends")
```

In some cases not all dependent packages are available on the user's system.
In these cases installing all dependencies is necessary.

```r
install.packages("baytrends", dependencies = TRUE)
```

The development version (with vignettes) from [GitHub](https://github.com/) 
can be installed with the code example below using the `remotes` package.

``` r
if(!require(remotes)){install.packages("remotes")}  #install if needed
install_github("tetratech/baytrends", force = TRUE, build_vignettes = TRUE)
```

Owner

  • Name: tetratech
  • Login: tetratech
  • Kind: organization

GitHub Events

Total
  • Issues event: 1
  • Issue comment event: 1
  • Push event: 4
Last Year
  • Issues event: 1
  • Issue comment event: 1
  • Push event: 4

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 249
  • Total Committers: 3
  • Avg Commits per committer: 83.0
  • Development Distribution Score (DDS): 0.438
Past Year
  • Commits: 2
  • Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Jon Harcum j****m@t****m 140
leppott E****o@t****m 108
olivroy 5****y 1
Committer Domains (Top 20 + Academic)
tetratech.com: 2

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 57
  • Total pull requests: 32
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 21 hours
  • Total issue authors: 6
  • Total pull request authors: 4
  • Average comments per issue: 1.7
  • Average comments per pull request: 0.22
  • Merged pull requests: 28
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jharcum (43)
  • leppott (10)
  • dutangc (1)
  • sckott (1)
  • ldecicco-USGS (1)
  • jharcum07 (1)
Pull Request Authors
  • jharcum (16)
  • leppott (13)
  • jharcum07 (4)
  • olivroy (4)
Top Labels
Issue Labels
enhancement (18) on hold (11) review (6) help wanted (4) bug (3)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 407 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 2
  • Total versions: 11
  • Total maintainers: 1
cran.r-project.org: baytrends

Long Term Water Quality Trend Analysis

  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 407 Last month
  • Docker Downloads: 21,613
Rankings
Docker downloads count: 0.6%
Forks count: 12.2%
Average: 17.3%
Stargazers count: 17.4%
Dependent repos count: 19.3%
Downloads: 25.7%
Dependent packages count: 28.8%
Maintainers (1)
Erik.Leppo@tetratech.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • dataRetrieval * imports
  • digest * imports
  • dplyr * imports
  • fitdistrplus * imports
  • grDevices * imports
  • knitr * imports
  • lubridate * imports
  • memoise * imports
  • mgcv * imports
  • pander * imports
  • plyr * imports
  • readxl * imports
  • sessioninfo * imports
  • survival * imports
  • devtools * suggests
  • imputeTS * suggests
  • markdown * suggests
  • nlme * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite