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BGmisc

BGmisc: An R Package for Extended Behavior Genetics Analysis - Published in JOSS (2024)

https://github.com/r-computing-lab/bgmisc

Science Score: 100.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org
  • ✓
    Committers with academic emails
    1 of 9 committers (11.1%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

behavior-genetics cran package r r-package

Scientific Fields

Engineering Computer Science - 32% confidence
Last synced: 6 months ago · JSON representation ·

Repository

Functions for extended pedigree analysis

Basic Info
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 3
  • Open Issues: 7
  • Releases: 12
Topics
behavior-genetics cran package r r-package
Created almost 6 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
options(citation.bibtex.max = 0)
```

# BGmisc


discord website
[![status](https://joss.theoj.org/papers/ee3a025be4f61584f977a7657d936187/status.svg)](https://joss.theoj.org/papers/10.21105/joss.06203) 

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![R package version](https://www.r-pkg.org/badges/version/BGmisc)](https://cran.r-project.org/package=BGmisc)
[![CRAN checks](https://badges.cranchecks.info/worst/BGmisc.svg)](https://cran.r-project.org/web/checks/check_results_BGmisc.html)
[![Package downloads](https://cranlogs.r-pkg.org/badges/grand-total/BGmisc)](https://cran.r-project.org/package=BGmisc)

[![R-CMD-check](https://github.com/R-Computing-Lab/BGmisc/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/R-Computing-Lab/BGmisc/actions/workflows/R-CMD-check.yaml)
[![Dev Main branch](https://github.com/R-Computing-Lab/BGmisc/actions/workflows/R-CMD-dev_maincheck.yaml/badge.svg)](https://github.com/R-Computing-Lab/BGmisc/actions/workflows/R-CMD-dev_maincheck.yaml)
[![Codecov test coverage](https://codecov.io/gh/R-Computing-Lab/BGmisc/graph/badge.svg?token=2IARK2XSA6)](https://app.codecov.io/gh/R-Computing-Lab/BGmisc)
![License](https://img.shields.io/badge/License-GPL_v3-blue.svg)


The BGmisc R package offers a comprehensive suite of functions tailored for extended behavior genetics analysis, including model identification, calculating relatedness, pedigree conversion, pedigree simulation, and more.

## Installation

You can install the released version of BGmisc from [CRAN](https://cran.r-project.org/) with:

```r
install.packages("BGmisc")
```

To install the development version of BGmisc from [GitHub](https://github.com/) use:

```r
# install.packages("devtools")
devtools::install_github("R-Computing-Lab/BGmisc")
```

## Citation

If you use BGmisc in your research or wish to refer to it, please cite the following paper:

```
citation(package = "BGmisc")
```
```{r,comment='',results='asis',echo=FALSE} 
print(citation(package = "BGmisc"), style = "text", bibtex = FALSE)
```

A BibTeX entry for LaTeX users is
```{r,comment='',echo=FALSE}
toBibtex(citation(package = "BGmisc"))
```

## Contributing
Contributions to the BGmisc project are welcome. For guidelines on how to contribute, please refer to the [Contributing Guidelines](https://github.com/R-Computing-Lab/BGmisc/blob/main/CONTRIBUTING.md). Issues and pull requests should be submitted on the GitHub repository. For support, please use the GitHub issues page.


### Branching and Versioning System
The development of BGmisc follows a [GitFlow branching strategy](https://tilburgsciencehub.com/topics/automation/version-control/advanced-git/git-branching-strategies/):

- **Feature Branches**: All major changes and new features should be developed on separate branches created from the dev_main branch. Name these branches according to the feature or change they are meant to address.
- **Development Branches**: Our approach includes two development branches, each serving distinct roles:
  - **`dev_main`**: This branch is the final integration stage before changes are merged into the `main` branch. It is considered stable, and only well-tested features and updates that are ready for the next release cycle are merged here.
  - **`dev`**: This branch serves as a less stable, active development environment. Feature branches are merged here. Changes here are more fluid and this branch is at a higher risk of breaking.
- **Main Branch** (`main`): The main branch mirrors the stable state of the project as seen on CRAN. Only fully tested and approved changes from the dev_main branch are merged into main to prepare for a new release.


## License
BGmisc is licensed under the GNU General Public License v3.0. For more details, see the [LICENSE.md](https://github.com/R-Computing-Lab/BGmisc/blob/main/LICENSE.md) file.

Owner

  • Name: R Computing Lab
  • Login: R-Computing-Lab
  • Kind: organization
  • Email: garrissm@wfu.edu
  • Location: Wake Forest University

JOSS Publication

BGmisc: An R Package for Extended Behavior Genetics Analysis
Published
February 24, 2024
DOI
Volume 9, Issue 94, Page 6203
Authors
S. Mason Garrison ORCID
Department of Psychology, Wake Forest University, North Carolina, USA
Michael D. Hunter ORCID
Department of Human Development and Family Studies, Pennsylvania State University, Pennsylvania, USA
Xuanyu Lyu ORCID
Department of Psychology, Wake Forest University, North Carolina, USA, Institute for Behavioral Genetics, University of Colorado at Boulder, Colorado, USA, Department of Psychology \& Neuroscience, University of Colorado at Boulder, Colorado, USA
Jonathan D. Trattner ORCID
Department of Psychology, Wake Forest University, North Carolina, USA
S. Alexandra Burt ORCID
Department of Psychology, Michigan State University, Michigan, USA
Editor
Øystein Sørensen ORCID
Tags
pedigrees behavior genetics
View PDF Review Thread Software Archive

Citation (CITATION.cff) 

cff-version: "1.2.0"
authors:
- family-names: Garrison
  given-names: S. Mason
  orcid: "https://orcid.org/0000-0002-4804-6003"
- family-names: Hunter
  given-names: Michael D.
  orcid: "https://orcid.org/0000-0002-3651-6709"
- family-names: Lyu
  given-names: Xuanyu
  orcid: "https://orcid.org/0000-0002-2841-5529"
- family-names: Trattner
  given-names: Jonathan D.
  orcid: "https://orcid.org/0000-0002-1097-7603"
- family-names: Burt
  given-names: S. Alexandra
  orcid: "https://orcid.org/0000-0001-5538-7431"
contact:
- family-names: Garrison
  given-names: S. Mason
  orcid: "https://orcid.org/0000-0002-4804-6003"
doi: 10.6084/m9.figshare.25238536
message: If you use this software, please cite our article in the
  Journal of Open Source Software.
preferred-citation:
  authors:
  - family-names: Garrison
    given-names: S. Mason
    orcid: "https://orcid.org/0000-0002-4804-6003"
  - family-names: Hunter
    given-names: Michael D.
    orcid: "https://orcid.org/0000-0002-3651-6709"
  - family-names: Lyu
    given-names: Xuanyu
    orcid: "https://orcid.org/0000-0002-2841-5529"
  - family-names: Trattner
    given-names: Jonathan D.
    orcid: "https://orcid.org/0000-0002-1097-7603"
  - family-names: Burt
    given-names: S. Alexandra
    orcid: "https://orcid.org/0000-0001-5538-7431"
  date-published: 2024-02-24
  doi: 10.21105/joss.06203
  issn: 2475-9066
  issue: 94
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 6203
  title: "BGmisc: An R Package for Extended Behavior Genetics Analysis"
  type: article
  year: 2024
  url: "https://joss.theoj.org/papers/10.21105/joss.06203"
  volume: 9
title: "BGmisc: An R Package for Extended Behavior Genetics Analysis"

GitHub Events

Total
  • Create event: 18
  • Release event: 4
  • Issues event: 7
  • Watch event: 2
  • Delete event: 12
  • Issue comment event: 32
  • Push event: 507
  • Pull request review comment event: 12
  • Pull request review event: 17
  • Pull request event: 70
Last Year
  • Create event: 18
  • Release event: 4
  • Issues event: 7
  • Watch event: 2
  • Delete event: 12
  • Issue comment event: 32
  • Push event: 508
  • Pull request review comment event: 12
  • Pull request review event: 17
  • Pull request event: 70

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 816
  • Total Committers: 9
  • Avg Commits per committer: 90.667
  • Development Distribution Score (DDS): 0.099
Past Year
  • Commits: 353
  • Committers: 3
  • Avg Commits per committer: 117.667
  • Development Distribution Score (DDS): 0.025
Top Committers
Name Email Commits
Mason Garrison g****m@w****u 735
mhunter1 m****u@g****m 42
Rachel Good 8****8 14
DESKTOP-QBA88EB\lxy75 l****5@g****m 13
Jonathan Trattner a****s@j****m 5
Øystein Sørensen o****n@h****m 4
thecarlossantosjr 4****r 1
Jake Thompson w****n@g****m 1
ImgBotApp I****p@g****m 1
Committer Domains (Top 20 + Academic)
jdtrat.com: 1 wfu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 19
  • Total pull requests: 134
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 5 days
  • Total issue authors: 3
  • Total pull request authors: 6
  • Average comments per issue: 0.63
  • Average comments per pull request: 0.67
  • Merged pull requests: 118
  • Bot issues: 0
  • Bot pull requests: 2
Past Year
  • Issues: 5
  • Pull requests: 82
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 3 days
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.74
  • Merged pull requests: 72
  • Bot issues: 0
  • Bot pull requests: 2
View more stats
Top Authors
Issue Authors
  • smasongarrison (13)
  • mhunter1 (4)
  • wjakethompson (2)
Pull Request Authors
  • smasongarrison (115)
  • Xuanyu-Lyu (5)
  • goodrn18 (5)
  • osorensen (4)
  • imgbot[bot] (2)
  • wjakethompson (2)
Top Labels
Issue Labels
enhancement (5) bug (3)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 934 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 11
  • Total maintainers: 1
cran.r-project.org: BGmisc

An R Package for Extended Behavior Genetics Analysis

  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 934 Last month
Rankings
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Average: 36.3%
Downloads: 43.5%
Maintainers (1)
garrissm@wfu.edu
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • Matrix * imports
  • stats * imports
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/draft-pdf.yml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v1 composite
  • openjournals/openjournals-draft-action master composite
  • stefanzweifel/git-auto-commit-action v4 composite