pybarrnap - v0.5.1

Changed

• Dropped python3.8 support
• Switched package manager poetry to rye

Fixed

• Fixed pyhmmer query property accessor to match newer version syntax
• Fixed pyhmmer dependency min version v0.11.0

- Python
Published by moshi4 over 1 year ago

pybarrnap - v0.5.0

Change Log

New Functionality

• Added kingdom=all option (with --accurate)

Improvement

• Added Rfam accession dbxref attribute to GFF output

Bug Fix

• Changed pyhmmer min version v0.10.8 to v0.10.9 to fix segmentation faults bug

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.4.1

Change Log

Improvement

• Improve docs & error message for installation

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.4.0

Change Log

New Functionality

• Add accurate option using cmscan(infernal)

Drop Support

• kingdom='mito' is no longer supported

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.3.0

Change Log

Improvement

• Updated HMM profile database (See details here)

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.2.0

Change Log

Improvement

• Fixed evalue results inconsistencies between nhmmer and pyhmmer.nhmmer (#2 thanks @althonos)
• Fixed to be able to read gzipped format file from CLI

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.1.1

Change Log

Improvement

• Added example notebook

Bug Fix

• Fixed to raise error when fasta contains duplication id

- Python
Published by moshi4 over 2 years ago

pybarrnap - v0.1.0

First Release

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

- Python
Published by moshi4 over 2 years ago