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Open Source Science

https://github.com/airr-community/ogrdbstats

Standardised reporting of genotype statistics as used by OGRDB

https://github.com/airr-community/ogrdbstats

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.5%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Standardised reporting of genotype statistics as used by OGRDB

Basic Info
Statistics
  • Stars: 1
  • Watchers: 5
  • Forks: 0
  • Open Issues: 1
  • Releases: 1
Created almost 7 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---

  
  [![R-CMD-check](https://github.com/airr-community/ogrdbstats/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/airr-community/ogrdbstats/actions/workflows/R-CMD-check.yaml)
  [![Docker Image](https://github.com/airr-community/ogrdbstats/actions/workflows/docker-image.yml/badge.svg)](https://github.com/airr-community/ogrdbstats/actions/workflows/docker-image.yml)
  

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(eval = FALSE)
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```


OGRDBstats analyses allele usage and recombination in an adaptive immune receptor repertoire. For more information, please see the [documentation](https://airr-community.github.io/ogrdbstats/).

Owner

  • Name: AIRR Community
  • Login: airr-community
  • Kind: organization

GitHub Events

Total
  • Issues event: 3
  • Issue comment event: 5
  • Push event: 8
Last Year
  • Issues event: 3
  • Issue comment event: 5
  • Push event: 8

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 55
  • Total Committers: 1
  • Avg Commits per committer: 55.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
William Lees w****m@l****k 55
Committer Domains (Top 20 + Academic)
lees.org.uk: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 6
  • Total pull requests: 0
  • Average time to close issues: 8 months
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 1.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: 3 days
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 1.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • scharch (5)
  • teunbrand (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 346 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
cran.r-project.org: ogrdbstats

Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 346 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 31.7%
Dependent repos count: 35.5%
Average: 35.5%
Downloads: 51.9%
Maintainers (1)
william@lees.org.uk
Last synced: 11 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/docker-image.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v4 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v2 composite
  • docker/setup-qemu-action v2 composite
.github/workflows/docker-release.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v4 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v2 composite
  • docker/setup-qemu-action v2 composite
DESCRIPTION cran
  • R >= 2.10 depends
  • Biostrings >= 2.52.0 imports
  • ComplexHeatmap * imports
  • RColorBrewer >= 1.1 imports
  • alakazam >= 0.3.0 imports
  • argparser >= 0.4 imports
  • bookdown * imports
  • data.table * imports
  • dplyr >= 0.8.3 imports
  • ggplot2 >= 3.2.1 imports
  • gridExtra >= 2.3 imports
  • magrittr * imports
  • scales * imports
  • stringdist >= 0.9.5.2 imports
  • stringr >= 1.4.0 imports
  • tidyr >= 1.0.0 imports
  • tigger >= 0.4.0 imports
  • knitr * suggests
  • rmarkdown * suggests
Dockerfile docker
  • immcantation/suite 4.4.0 build