Finch
Finch: a tool adding dynamic abundance filtering to genomic MinHashing - Published in JOSS (2018)
TimeseriesSurrogates.jl
TimeseriesSurrogates.jl: a Julia package for generating surrogate data - Published in JOSS (2022)
Gridap
Gridap: An extensible Finite Element toolbox in Julia - Published in JOSS (2020)
Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact
Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact - Published in JOSS (2022)
Frites
Frites: A Python package for functional connectivity analysis and group-level statistics of neurophysiological data - Published in JOSS (2022)
qicharts2
qicharts2: Quality Improvement Charts for R - Published in JOSS (2018)
Gala
Gala: A Python package for galactic dynamics - Published in JOSS (2017)
measr
measr: Bayesian psychometric measurement using Stan - Published in JOSS (2023)
Manopt.jl
Manopt.jl: Optimization on Manifolds in Julia - Published in JOSS (2022)
FDApy
FDApy: a Python package for functional data - Published in JOSS (2025)
oce
oce: an R package for Oceanographic Analysis - Published in JOSS (2022)
Sciris
Sciris: Simplifying scientific software in Python - Published in JOSS (2023)
kuibit
kuibit: Analyzing Einstein Toolkit simulations with Python - Published in JOSS (2021)
coalitions
coalitions: Coalition probabilities in multi-party democracies - Published in JOSS (2018)
pymdp
pymdp: A Python library for active inference in discrete state spaces - Published in JOSS (2022)
Mechkit
Mechkit: A continuum mechanics toolkit in Python - Published in JOSS (2022)
mTRFpy
mTRFpy: A Python package for temporal response function analysis - Published in JOSS (2023)
LiberTEM
LiberTEM: Software platform for scalable multidimensional data processing in transmission electron microscopy - Published in JOSS (2020)
schwimmbad
schwimmbad: A uniform interface to parallel processing pools in Python - Published in JOSS (2017)