chtc-containers
This repos contains information how to build, test, and run containers on CHTC. It contains examples of definition files for several bioinformatics softwares.
cdf2medmij-mapping-tool
Tool for transforming Cohort-study Data (CDF) into FHIR/MedMij compliant resource bundles
theofun
New home for Will Deakin's 'theofun' functionalities starting Dec/2024
trenchripper
Small library for analysis of mother machine data. Built to run on a SLURM cluster, but can be run locally.
esmvaltool-dask-paper
Additional material to reproduce the results of Schlund et al. (2025)
sitinglab
This repository contains a collection of user-friendly tutorials and guides for working with the Siting Lab data within the context of the reV model. The python code examples demonstrate the creation and transformation of Siting Lab data into reV compliant format as well as working with the reV model inputs and outputs.
dynaplex
DynaPlex is a software library for formulating and solving Markov Decision Problems, written primarily in C++20